PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g03050.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 515aa    MW: 56942.5 Da    PI: 9.8203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g03050.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-17337374138
                                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
                          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 
                                     k+ien s rqvtfskRr g+lKKA+EL +LCda++  i
  Zjn_sc00023.1.g03050.1.am.mkhc 337 KKIENPSSRQVTFSKRRMGLLKKANELAILCDAQIGKI 374
                                     68********************************9655 PP
2K-box51.93.3e-18366446989
                           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                     l++a+  +  +e++++k+e + L+   R+++G+dL  Lsl++  +LeqqLe sl k+R +K+ell +q+ e+++++ + 
  Zjn_sc00023.1.g03050.1.am.mkhc 366 LCDAQIGKIIREMTRMKDERNRLRIIMRQYMGDDLALLSLQDVTNLEQQLEFSLYKVRLRKQELLDQQLLEMRHRQTQS 444
                                     77888889999***************************************************************99876 PP

                           K-box  88 qe 89 
                                      +
  Zjn_sc00023.1.g03050.1.am.mkhc 445 AD 446
                                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd053692.12E-11848301No hitNo description
Gene3DG3DSA:3.40.50.7201.8E-7348302IPR016040NAD(P)-binding domain
SuperFamilySSF517351.01E-6851301IPR016040NAD(P)-binding domain
PRINTSPR000811.1E-245269IPR002347Short-chain dehydrogenase/reductase SDR
PfamPF135612.1E-4860299No hitNo description
PRINTSPR000811.1E-24126137IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.5E-7126137IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.1E-24180196IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.5E-7186194IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.1E-24206225IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.5E-7206225IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.1E-24228245IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.1E-24263283IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF554554.06E-19329378IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.278329375IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-22329388IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-17331351IPR002100Transcription factor, MADS-box
PfamPF003191.7E-17338375IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-17351366IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-17366387IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.094371454IPR002487Transcription factor, K-box
PfamPF014863.0E-14374447IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005774Cellular Componentvacuolar membrane
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
FPTPNETVPA SACSFLRSSI APLRLPASRA RREPTARSME SPFRPDVLSR KAALVTGGGS  60
GICFEIAAQL ARHGAQVAIM GRRREVLDKA VDALRSQGFQ AVGFDGDVRK QEDAARVLAA  120
TVQHFGKLDI LVNGAAGNFL ASPEDLTPKG FRTVLEIDTV GTYTMCYEAL KYLKKGGPGK  180
GPSDGGLIIN ISATLHYTAS WYQIHVSAAK AGVDSITRSL ALEWGTDYDI RVNGIAPGPI  240
QGTPGLRKLA PEEMGKGSRE LMPLFKFGEK WDIAMAALYL ASDAGKYVNG TTMIVDGGLW  300
LSHPRHVPKE EVKALSRVVE KKEHLAGLMG RGKVELKKIE NPSSRQVTFS KRRMGLLKKA  360
NELAILCDAQ IGKIIREMTR MKDERNRLRI IMRQYMGDDL ALLSLQDVTN LEQQLEFSLY  420
KVRLRKQELL DQQLLEMRHR QTQSADEMVA NPTNKPFPWW DDAGSSQQLY GHHDAEPSTM  480
TALQLLPQLG EYNKLQPLQP NQKDSAGLQS FILRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fc6_A9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_B9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_C9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc6_D9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_A9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_B9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_C9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
4fc7_D9e-544330420275Peroxisomal 2,4-dienoyl-CoA reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxiliary enzyme of beta-oxidation. Participates in the degradation of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions in peroxisome. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976797.10.0peroxisomal 2,4-dienoyl-CoA reductase
SwissprotQ9LTV61e-139DECR2_ARATH; Peroxisomal 2,4-dienoyl-CoA reductase
TrEMBLA0A3L6PYE30.0A0A3L6PYE3_PANMI; Peroxisomal 2,4-dienoyl-CoA reductase-like
STRINGSb06g028410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP498922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-23MIKC_MADS family protein
Publications ? help Back to Top
  1. Reumann S,Ma C,Lemke S,Babujee L
    AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes.
    Plant Physiol., 2004. 136(1): p. 2587-608
    [PMID:15333753]
  2. Reumann S, et al.
    Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.
    Plant Cell, 2007. 19(10): p. 3170-93
    [PMID:17951448]
  3. Wiszniewski AA,Zhou W,Smith SM,Bussell JD
    Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins.
    Plant Mol. Biol., 2009. 69(5): p. 503-15
    [PMID:19043666]