PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00023.1.g02210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 568aa MW: 62170.7 Da PI: 10.3951 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 320 | 363 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs+++ +++k+CErH++rgr+rsrk++e+ Zjn_sc00023.1.g02210.1.am.mk 320 LEPGRCRRTDGKKWRCSKEAAPDSKYCERHMQRGRNRSRKPVEP 363 69***************************************997 PP | |||||||
2 | QLQ | 59.8 | 7.7e-21 | 221 | 256 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q+l+yKyL+a++PvPpeLl++i++ Zjn_sc00023.1.g02210.1.am.mk 221 PFTPAQYEELEQQALIYKYLLAGVPVPPELLVPIRR 256 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-13 | 220 | 256 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 221 | 255 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.62 | 221 | 256 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.021 | 319 | 363 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-20 | 321 | 362 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MPPVRCRRRP VKIFVSGLAQ RARAAAREVS VAWGRAWRSL SASACAHRFP SLAPLCVLPH 60 EAVLCLKALQ SFRTSSARGK RSETTPKDGK AKNRSGTAKP KIEVERQSVW PLARRRCDHR 120 LVCPVVMNGW QKEACLLPGR HVYQLSCRPG AEHLSRLTWR RAYPSRAAPS KHRYGDALCL 180 PVSGNGSPPL LPFYRASPHS AAGEDAQRQQ QQAMSGRWPA PFTPAQYEEL EQQALIYKYL 240 LAGVPVPPEL LVPIRRGFVY HQPPRKHASP LDLVVYSDRG VQVSRLLVRA HHITSLTKLV 300 LCVRFAVGYG PPDFGKKVDL EPGRCRRTDG KKWRCSKEAA PDSKYCERHM QRGRNRSRKP 360 VEPQLVAAPI SQPPAQANLA GGCQNHTLYS AIAGSGSGAA RRGGGATGVH GLGSAAQMHM 420 DNAAPYATAA GGGSKDLRYS SYGARTLAAE QSQLISGGTD SWMENSWRLL PSQTSTFQVS 480 SYPLYGTLSG LDESTTSSLP KTERQPVSLF GSDFAMQENQ TLRPFFDEWP KSRGSWSELA 540 DDNSLSSFSA TQLSISIPMG TSTPAPDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF515844 | 1e-68 | EF515844.1 Zea mays putative growth-regulating factor 5 (GRF5) mRNA, complete cds. | |||
GenBank | EF515845 | 1e-68 | EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds. | |||
GenBank | EU962787 | 1e-68 | EU962787.1 Zea mays clone 245531 growth-regulating factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976689.1 | 1e-141 | growth-regulating factor 3 | ||||
Swissprot | Q6AWY6 | 1e-130 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0A9GJC3 | 1e-142 | A0A0A9GJC3_ARUDO; GRF5 | ||||
STRING | Si011853m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-36 | growth-regulating factor 5 |