PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00023.1.g01260.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 405aa MW: 45127.6 Da PI: 8.3872 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.3e-15 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ +++G g W++I +++g +t+ q++s+ qk+ Zjn_sc00023.1.g01260.1.sm.mkhc 49 REKWTEDEHKLFLESLELHGRG-WRRIQEHIG-SKTAVQIRSHAQKF 93 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-15 | 43 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.509 | 44 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-8 | 46 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-14 | 47 | 96 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-11 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 49 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.28E-10 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MARFQEFEVN CDVGREYHQK NPLNSTAMDL PAEERMPKAR KPYTISKQRE KWTEDEHKLF 60 LESLELHGRG WRRIQEHIGS KTAVQIRSHA QKFFSKVTRE ASGDGNGTAA APQIRIPPPR 120 PKRKPTHPYP RKLGNSPGKD TPSLKQLDKP RLQVVPSLYE QENGSPKSVL TTAQVVRSPA 180 SSVDSEDRYP APRIAAVEVA TQLPPYKVAN DDTASKHATC AIPESHVLRL FGKRVVVNGL 240 HQQPNSDTRN QQNVADMELD ASAEAPTSET EKTFSCGAAE ANTLNPCLTD AHQFMYYFPR 300 GKAEQPHYQP SQAADCRFTS GEGSCTASVT TSGGVPETPT WNSDSVESMQ VINNEDEVIP 360 VPGSRKCANR TPDHLQGFVP YKKWKMVQSK TPEVEANREM TRLCL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824173.1 | 1e-151 | uncharacterized protein LOC112899782 | ||||
Swissprot | F4KGY6 | 1e-39 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A2S3I9P7 | 1e-150 | A0A2S3I9P7_9POAL; Uncharacterized protein | ||||
STRING | Si010077m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-35 | MYB_related family protein |
Publications ? help Back to Top | |||
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