PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g01260.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 405aa    MW: 45127.6 Da    PI: 8.3872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g01260.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-154993147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r +WT++E++l+++  +++G g W++I +++g  +t+ q++s+ qk+
  Zjn_sc00023.1.g01260.1.sm.mkhc 49 REKWTEDEHKLFLESLELHGRG-WRRIQEHIG-SKTAVQIRSHAQKF 93
                                    789*******************.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-154399IPR009057Homeodomain-like
PROSITE profilePS5129417.5094498IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-84695IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-144796IPR006447Myb domain, plants
SMARTSM007171.5E-114896IPR001005SANT/Myb domain
PfamPF002493.9E-134992IPR001005SANT/Myb domain
CDDcd001674.28E-105194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MARFQEFEVN CDVGREYHQK NPLNSTAMDL PAEERMPKAR KPYTISKQRE KWTEDEHKLF  60
LESLELHGRG WRRIQEHIGS KTAVQIRSHA QKFFSKVTRE ASGDGNGTAA APQIRIPPPR  120
PKRKPTHPYP RKLGNSPGKD TPSLKQLDKP RLQVVPSLYE QENGSPKSVL TTAQVVRSPA  180
SSVDSEDRYP APRIAAVEVA TQLPPYKVAN DDTASKHATC AIPESHVLRL FGKRVVVNGL  240
HQQPNSDTRN QQNVADMELD ASAEAPTSET EKTFSCGAAE ANTLNPCLTD AHQFMYYFPR  300
GKAEQPHYQP SQAADCRFTS GEGSCTASVT TSGGVPETPT WNSDSVESMQ VINNEDEVIP  360
VPGSRKCANR TPDHLQGFVP YKKWKMVQSK TPEVEANREM TRLCL
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.11e-151uncharacterized protein LOC112899782
SwissprotF4KGY61e-39RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A2S3I9P71e-150A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGSi010077m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-35MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]