PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 728aa    MW: 77664.5 Da    PI: 8.5828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-052143123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k F r  nL+ H r H
  Zjn_sc00023.1.g00260.1.am.mk 21 FVCEVCNKGFQREQNLQLHRRGH 43
                                  89*******************88 PP
2zf-C2H211.40.00198120123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zjn_sc00023.1.g00260.1.am.mk  98 WKCDKCSKRYAVQSDWKAHSKIC 120
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.53E-72043No hitNo description
Gene3DG3DSA:3.30.160.601.0E-52043IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00412143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0942143IPR007087Zinc finger, C2H2
PfamPF121714.9E-52143IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-486119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.53E-793118No hitNo description
SMARTSM0035514098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPLQAQRR  60
RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC  120
GTREYRCDCG TLFSRVRVLF GLAATWLWMA LVLTGRDEKE ENTPQHRGEE EACRAGELRD  180
SFITHRAFCD ALVQETARLP PTGLSSLTSQ LYGATNAGNM ALSLSQVGSH FNSTLQARGM  240
AGGSSIAARL DHLLSPSGAS AFRPPPPSAF FLNAGAGQDF GDDTGNGPHS FLQSKPFHGL  300
MQLPDLQGNG AGGPGASGPG LFNLGFFANN GNSSGSSHEH ASQGLMNNDQ FSGGDGGGGG  360
GGGSEASAAG IFCGNYVGDG DHVPQAGLFS EQAAGMLPQM SATALLQKAA QMGATSSPNG  420
AASMFRGFAG TSPHIRPAMP HMEQSDANLN DLMNSLAGSG VSAGGMFGGS NGGGGGAGMF  480
DPRQLCDMEQ EVKFGQGGGD MTRDFLGVGG GGIVRGISTP RGDHQSSSDM SSLEAEMNSF  540
PLSSRACCRA LGYAGSLRRT ESERAWVNGQ ENSDEDKSGS IRLLHVHLSA ARECSDGPCA  600
RFNSLVGHLA VATPHSYAWL SSSTPCGRQR WSLAPPLAFL SAVFRMVCVA LTNYGDGDRQ  660
EQPPQKLEIS RRKSGCRFPL ILGRKGWRGR GCATTIRLPL LSLICCVCVK VKSTYQKYSC  720
SPERLAKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-2694199365Zinc finger protein JACKDAW
5b3h_F9e-2694199365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351363SGGDGGGGGGGGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
GenBankAP0041880.0AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A3L6PX340.0A0A3L6PX34_PANMI; Uncharacterized protein
STRINGGRMZM2G129261_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.15e-92indeterminate(ID)-domain 4