PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g00150.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 504aa    MW: 56989.6 Da    PI: 9.8935
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g00150.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.72.4e-23186235352
                        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                   + i+l +++++F+lp+++A+k+L+v+++ LK++CR+yGI+RWP+Rk+ksl
  Zjn_sc00023.1.g00150.1.am.mk 186 AGITLAEIAQCFHLPMREASKTLKVGVSFLKKKCREYGIHRWPQRKLKSL 235
                                   679*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.325170258IPR003035RWP-RK domain
PfamPF020421.7E-19188235IPR003035RWP-RK domain
PfamPF077145.9E-5368461IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
SuperFamilySSF561124.07E-15368464IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.5E-12370462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MACAVRSVHG YKVVGRKAGL GWVRWERWVE RGFVLSADGS REVGVPDAAP RILQAGCHGR  60
PAFREGDTVG EWRCIVAFDS VADVKPSVPP PPVLCPIWNP QLKCLPNLYN DLEKVFHFQS  120
VENLPQLIHS DSEEQQESIQ PGEWENISDQ AEYASNSDSG SDENPQSGTE PLTVKKYRRA  180
NKGHIAGITL AEIAQCFHLP MREASKTLKV GVSFLKKKCR EYGIHRWPQR KLKSLDSLIH  240
DLQRKRMLER EKETIRQKPA LDLMAETKLF REDGTRPRFL CRRATGKRRQ IPKRRGVWQL  300
QETEESRRKQ RKRSVPSTEL AVAAASMGNC FSSEEAEVEA VKNYEHHHGQ PQDSQSRPYS  360
VFTWPRHLYV KSDVYGFGVV LLEMLTGLRA MDTGRPAEQH NLVDWAKPYL ADRRRLARLV  420
DPRLEGQYPS EAALKAAQLT LRCLAGEPRS RPSMAEVVAS LEEIERIRPR PKGEAARTGQ  480
RDNRSSRSRS GGGGDSDGAR SGHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_A2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5t_D2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5t_I2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5t_J2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5t_M2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5u_C2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j5v_C2e-27368467273372Probable serine/threonine-protein kinase PBL2
6j6i_A2e-27368467273372Probable serine/threonine-protein kinase PBL2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066282e-88AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBankAP0149602e-88AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-88CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976506.18e-94protein RKD5
TrEMBLA0A368RXP82e-92A0A368RXP8_SETIT; Uncharacterized protein
STRINGPavir.Ga01021.1.p2e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-29RWP-RK domain-containing protein