PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g08190.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 73659.9 Da PI: 7.592 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 5.1e-17 | 131 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f k+lt++d ++ +p ae++ + k +++tl+ +d +g W+++++yrk++ r+ l++GW+ Fv+ ++L Zjn_sc00022.1.g08190.1.am.mk 131 FAKTLTQPDIAYP-WFLVPEYIAETIfpplnyD-AKLSEQTLVAKDVHGTAWKFQHSYRKRPLRHQLATGWSTFVRNKRLF 209 5666655555554.5777888888888888752.3446679**************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD++vF + +++ l+++++r+ Zjn_sc00022.1.g08190.1.am.mk 210 TGDSIVFL--RGDGGDLHIGIRRA 231 ********..3488999****996 PP | |||||||
2 | Auxin_resp | 100.9 | 1.7e-33 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 aa+ as +++Fev ++P +eF+v+++ v +a++v++s+GmRfkmafet+dss++ + +Gtv+gv+ +dpvrWp+S Wr Zjn_sc00022.1.g08190.1.am.mk 253 AARLASAGQPFEVAFYPCLNMPEFCVRAKVVDEAMRVPWSPGMRFKMAFETDDSSQIIWfTGTVTGVKVADPVRWPQSLWR 333 68899**************************************************************************** PP Auxin_resp 81 sLk 83 +L+ Zjn_sc00022.1.g08190.1.am.mk 334 LLE 336 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-27 | 125 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-20 | 128 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.74E-15 | 130 | 230 | No hit | No description |
PROSITE profile | PS50863 | 10.856 | 130 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-11 | 131 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-14 | 132 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-28 | 253 | 335 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.704 | 556 | 632 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MASGSLPMIT AGDQQAPAAG AERCVDRHLW LACAGRMCTV PPVGDIVYYF PQGHAEHAAG 60 PAGLFSATVD LSAARVLVHV LCRVTAVRYM ADPETDEVFA RILLIPLPDG VMGAGLDDDA 120 AVDETKKPAS FAKTLTQPDI AYPWFLVPEY IAETIFPPLN YDAKLSEQTL VAKDVHGTAW 180 KFQHSYRKRP LRHQLATGWS TFVRNKRLFT GDSIVFLRGD GGDLHIGIRR AKSEFCGAGM 240 GRAKVMAEDL VEAARLASAG QPFEVAFYPC LNMPEFCVRA KVVDEAMRVP WSPGMRFKMA 300 FETDDSSQII WFTGTVTGVK VADPVRWPQS LWRLLEVTWD RPERLRNVKR VSPWLVEVVS 360 SMPDPSFLPP RKKPRSVHPE FPFDGQLLNS AFPPNPLPHS QPPRPYFLNT YPSLFPFPSG 420 SAPAAMQGAR HAQSVPSLPD YLTNLPSSLL YPGSHRPTTI PEPAIINTGL TIGGNNKKPE 480 KPAGIRLFGQ IIQTEEQMSL GSSSGATSPA ATTTSSLNWN AEKGANVSDS SRDKASSERQ 540 WSGDGSSHLS DLGLGPGQCE VFMESDTVGR NLDLSSLTSF DEFYHRLSEV FGIESAALRS 600 RVIYRDATGA VKHIGDGSFR SARRLTILTD AGAGRENLVL PGYRRRSANA WPQLQPIPMI 660 VACLPPPDDE LKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 7e-60 | 27 | 361 | 21 | 357 | Auxin response factor 1 |
4ldy_B | 7e-60 | 27 | 361 | 21 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 369 | 375 | PRKKPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953169.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A368PP63 | 0.0 | A0A368PP63_SETIT; Auxin response factor | ||||
STRING | Si016509m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-155 | auxin response factor 16 |