PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g07910.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 744aa MW: 79274.5 Da PI: 10.512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g07910.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.6	9.3e-34	229	338	8	89
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss + Zjn_sc00022.1.g07910.1.am.mk 229 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSSHYQ 309 589*******************************************************99999444322221111111111 PP TCP 84 nsssg..........................k 89 + + + Zjn_sc00022.1.g07910.1.am.mk 310 Q---SvlgkrpreegdatvaaasafwaalpsA 338 1...1234444444555555544444444442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-30	228	308	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	229	283	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MSNRSALCEP IPYRGAICGC SMTDWNDAVR TNFHQVALAR QIASKRRYSY LVSRGPRPPN 60 RACIRPRRPG DGPARDADAG LHARGQRYRA STSIQGRNLE NAISIHEVLP QQRAPLPGSF 120 SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALGA PQVHTSTSRQ RYETGAMPTR 180 DVSTAAAAMF HVYQPAQIPS TAAPATAATD GTVKVPASTQ GKKKAAQGGK DRHSKVNGRG 240 RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS 300 TSSSSSHYQQ SVLGKRPREE GDATVAAASA FWAALPSAAP RTEAWGFSPL EAQAATYVPM 360 AQAHHLNLLA ALSGAARRAE EETRVLDFVC ASQSVGEQFH FAPVGRFSSL SLGIASRGKG 420 TEGKRLRRLQ PAPQQSCRLP PAYENFANAN GEKVEAVASA PERTRSGFVS NPEATSSRRP 480 NCYQLTRPAM VDGCHGARPW RSGLAVACAL AAGKADPKGT WPSSEENEGG EARKRVKLPA 540 DAWTHADKTH AGLSKQCGAV LFRSPCRAPA PCCWLTTKLL VYVHRPRTSM ATHHTTPNDE 600 AESVGTRDRD ETGPCCRDFS ARDGAMPGQV RAGTPYRTAA RATSCLPTAR RVARSLSGQI 660 LFRCLASPAP TGRPRAGFGE APRRSTGRAL SSLINAVVAR QTGEEACARQ LGFGPATVLQ 720 LKSAERLSPA DCQLLGSLAL APGC

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MSNRSALCEP IPYRGAICGC SMTDWNDAVR TNFHQVALAR QIASKRRYSY LVSRGPRPPN  60
RACIRPRRPG DGPARDADAG LHARGQRYRA STSIQGRNLE NAISIHEVLP QQRAPLPGSF  120
SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALGA PQVHTSTSRQ RYETGAMPTR  180
DVSTAAAAMF HVYQPAQIPS TAAPATAATD GTVKVPASTQ GKKKAAQGGK DRHSKVNGRG  240
RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS  300
TSSSSSHYQQ SVLGKRPREE GDATVAAASA FWAALPSAAP RTEAWGFSPL EAQAATYVPM  360
AQAHHLNLLA ALSGAARRAE EETRVLDFVC ASQSVGEQFH FAPVGRFSSL SLGIASRGKG  420
TEGKRLRRLQ PAPQQSCRLP PAYENFANAN GEKVEAVASA PERTRSGFVS NPEATSSRRP  480
NCYQLTRPAM VDGCHGARPW RSGLAVACAL AAGKADPKGT WPSSEENEGG EARKRVKLPA  540
DAWTHADKTH AGLSKQCGAV LFRSPCRAPA PCCWLTTKLL VYVHRPRTSM ATHHTTPNDE  600
AESVGTRDRD ETGPCCRDFS ARDGAMPGQV RAGTPYRTAA RATSCLPTAR RVARSLSGQI  660
LFRCLASPAP TGRPRAGFGE APRRSTGRAL SSLINAVVAR QTGEEACARQ LGFGPATVLQ  720
LKSAERLSPA DCQLLGSLAL APGC

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-30	TCP family protein