PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g07560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 434aa    MW: 47784.4 Da    PI: 10.6328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g07560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.7e-10182215135
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                                   +g+WT+eEd+llvd+++  G g+W++ ++  g  +
  Zjn_sc00022.1.g07560.1.am.mk 182 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAG-LL 215
                                   79***************************999.33 PP
2Myb_DNA-binding27.47.9e-092322562348
                                   -HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqkyl 48 
                                   +W+ Ia+ ++ gRt++++k++w+++l
  Zjn_sc00022.1.g07560.1.am.mk 232 RWSMIAAQLP-GRTDNEIKNYWNTHL 256
                                   5*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.952177260IPR017930Myb domain
SuperFamilySSF466893.99E-13179252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-9181212IPR009057Homeodomain-like
SMARTSM007175.3E-14181258IPR001005SANT/Myb domain
PfamPF002492.0E-7182213IPR001005SANT/Myb domain
CDDcd001671.72E-10184256No hitNo description
Gene3DG3DSA:1.10.10.603.1E-13231257IPR009057Homeodomain-like
PfamPF002493.2E-6231256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MMEPENTAAD SPASQELSQV RIYSSLRPLR IRARPGRAPL HLKEASPLSP DLAQEYLGAL  60
VKTWPDTRRP LNPPHATPTT SPSSRRRQQS ARKILLGRKH DPPRRPRARL SVSRPNPFSY  120
HFTSQISHRP VRAARARAWR QRVITSFSVR AEREKRVGTG GSRRRRPMGR APCCDKKQGL  180
TKGPWTPEED KLLVDYIQAN GHGSWRLLPK LAGLLDLKSF QYALLFVPLC GRWSMIAAQL  240
PGRTDNEIKN YWNTHLKKQL RRMGLEDPPP GPASGSPAAR HMAQWETARL EAEARLSLLA  300
AASSASGAAT ATTTTTSASS SSTIGAVCDA PADIYLRLWS SDIGDSFRKV AKAAESPPVS  360
VKKKDAVTIK QEGQALAGDD SSAASNEVDV AMALEEYQMF LDLAGEELGM FHGRYGDFSM  420
FDMLTEAPLA AAFK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386931e-80BT038693.1 Zea mays full-length cDNA clone ZM_BFb0309J21 mRNA, complete cds.
GenBankKJ7275281e-80KJ727528.1 Zea mays clone pUT5388 MYB transcription factor (MYB103) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148496.11e-107P-type R2R3 Myb protein
SwissprotQ9M2D93e-51MYB17_ARATH; Transcription factor MYB17
TrEMBLC0PCI61e-109C0PCI6_MAIZE; MYB transcription factor
STRINGGRMZM2G040924_P011e-109(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-33myb domain protein 17