PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06420.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 842aa    MW: 90138.5 Da    PI: 9.6779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017143164223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C+ C ++F ++  +  H+r+H
  Zjn_sc00022.1.g06420.1.am.mk 143 TCKLCFRRFASPRAMAGHMRSH 164
                                   6********************9 PP
2zf-C2H213.10.0003394416123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+Cp+C+++F++   L  H r+H
  Zjn_sc00022.1.g06420.1.am.mk 394 YECPHCHRVFPSGQALGGHKRSH 416
                                   99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.081142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743142169IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
PfamPF139120.066144164IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-5329351No hitNo description
PfamPF139127.7E-8329353IPR007087Zinc finger, C2H2
SMARTSM00355110329349IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.13E-5389416No hitNo description
PROSITE profilePS5015710.118394416IPR007087Zinc finger, C2H2
PfamPF139122.3E-12394416IPR007087Zinc finger, C2H2
SMARTSM003550.0077394416IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280396416IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MIKHISCATG TREATTQSPA VSTREAAAPS RLFDGSRQLT PLLTIPWTHA RTEHATAPPC  60
LLAWHDPAQL RREAETAVAS SSQTRAGDGR HEQVVAVVAP FVLSGALSLA LAPPFSLLTI  120
FAPAESSARA PRALSTLAMT KNTCKLCFRR FASPRAMAGH MRSHSVAAPA ASAAAAAAAT  180
AAAARQPISS ASSASTSFTT ADEDVGFRKP SSTYTLRENP KRSLRGAVRS SSDRESEAES  240
TPPRSKRPSP RAARGEQEPL SSLSEADTPE EDVALSLMKL SRDSWPSAAP METDCSDDES  300
DDGYAPPTPP SPPPRPAPAP PVAEKRTQFQ CVACKKVFRS YQALGGHRAS NVRGGRGGCC  360
APPVNAPPLP QHHAPSPLPE QHGEEGVDAK QQPYECPHCH RVFPSGQALG GHKRSHVCGA  420
AAAAAEQAVP ASTPPSPINN PGMIDLNVEP PSEEVELSAV SDPHFNPAAA CSTCMRRSFH  480
CCHEQCLVSR SCLPAWHSGL LPSFAASGHH MLYVDQTGIR HSSRRETARG PPSIFGGAGG  540
WSPLGPAPAS TWRASRAFYL SEAGPGASWT CSGLSGAWWV RTVIASRNPG SYAEVLFSPP  600
HHGPWLPYPR KPVRRAARGG SRGRNGWRTR VRAWSVQMTG GSVRRQVGRT RCGGDGGESE  660
GWRVTWSPDP DWTGDTQLGI RAPFPVSRPV AVVERRSSRR SGRCTEQVPC FDLVASSRSH  720
ESRGIMPSCV RARGPIEIGV AVLKRKLGSR CAADFGHDAF AGCLAPLWSP LERLAGKPFV  780
TLVHTHRRRQ HEAFLPSSAE SCRTSALEMR LPLLHIHFHA AFRFALGVRA GSSYERSHWS  840
QP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741907e-40EU974190.1 Zea mays clone 442455 cys2/His2 zinc-finger transcription factor mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-22C2H2-like zinc finger protein