PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g05950.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 26343.2 Da PI: 10.5776 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.2 | 6.8e-06 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zjn_sc00022.1.g05950.1.sm.mk 104 FVCEVCSKGFQREQNLQLHRRGH 126 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 181 | 203 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zjn_sc00022.1.g05950.1.sm.mk 181 WKCDKCSKRYAVQSDWKAHSKIC 203 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-6 | 103 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.09E-7 | 103 | 126 | No hit | No description |
Pfam | PF12171 | 5.0E-5 | 104 | 126 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.032 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0086 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 146 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 169 | 202 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.09E-7 | 176 | 201 | No hit | No description |
SMART | SM00355 | 140 | 181 | 201 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MASNSSAAAV AALLGIRDGD HHEQMKPLLA QPHQQSHVAP LNIGASSSAG SGQATAVPPL 60 PVKKKRNLPG NSSNGVSFLI YVHADPDAEV IALTPKTLMA TNRFVCEVCS KGFQREQNLQ 120 LHRRGHNLPW KLKQKDPAQA QRRRVYTCPE PTCAHHDPAR ALGDLTGIKK HFCRKHGEKK 180 WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSRKP GRRTTARRSG TISIHTEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-22 | 177 | 219 | 3 | 45 | Zinc finger protein JACKDAW |
5b3h_F | 3e-22 | 177 | 219 | 3 | 45 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP681642 | 1e-174 | KP681642.1 Zea mays subsp. mays IDD9 (Nkd2) gene, nkd2-R allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105281.2 | 1e-111 | INDETERMINATE-related protein 10 | ||||
Swissprot | O22759 | 3e-88 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A1E5V9G2 | 1e-118 | A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic | ||||
STRING | Pavir.Gb01057.1.p | 1e-108 | (Panicum virgatum) | ||||
STRING | GRMZM2G090595_P01 | 1e-111 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 5e-89 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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