PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g05790.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 414aa MW: 43187.3 Da PI: 9.17 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.3e-39 | 141 | 201 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Zjn_sc00022.1.g05790.1.am.mkhc 141 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 201 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 137 | 199 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-33 | 143 | 199 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 145 | 199 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 147 | 183 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
ERRETERGEG AAIPQRPSTG HSSWLVHLLG TRPLAAPPLE LFVSLASWSY RKPQELLPIE 60 ERDWSPCMHG RGTLESGLVK PMEEMIMAGN PYPNQNRNPA PAAPSAPGPQ RAGGAPAAAP 120 AGASSGAAAG AGTERRARPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT 180 EGGSLRNVPV GGGSRKNKRS SASVSAAAAV ATSAAMVPVG LAAKNPKLMH EGAQDLNLAF 240 PHHNGRGLQP PEFAAFPSLE SSSVGAFSAL DLLRSTGCYV PLQHVQLGMP AEYESAGFAL 300 GELRMPPPPQ SQSMLGFSLD THGTGGVGGA GGYSAGLQDS AAAGRLLFPF EDLKPAVSAG 360 GGVANAGGDQ YKHNKDQGGD GRAASRVTGG HDTPGFWNNS MIGNGSSNGG GGPW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582410 | 1e-131 | KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826520.1 | 1e-141 | dof zinc finger protein 2-like isoform X1 | ||||
Refseq | XP_025826521.1 | 1e-141 | dof zinc finger protein 2-like isoform X2 | ||||
Swissprot | B9F1L8 | 1e-119 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A1E5VJZ3 | 1e-144 | A0A1E5VJZ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00902.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-49 | Dof family protein |
Publications ? help Back to Top | |||
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