PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g04180.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 1213aa MW: 132241 Da PI: 11.4764 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76 | 3.8e-24 | 1086 | 1130 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Zjn_sc00022.1.g04180.1.am.mk 1086 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 1130 79****************************************997 PP | |||||||
2 | QLQ | 56.3 | 1e-19 | 976 | 1011 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ+++L++Q+l+yKyL+a++ vPp+L+++i++ Zjn_sc00022.1.g04180.1.am.mk 976 PFTPAQFEELEQQALIYKYLVAGVAVPPDLVVPIRR 1011 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-11 | 975 | 1011 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.065 | 976 | 1011 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-13 | 976 | 1010 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.486 | 1086 | 1130 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 1087 | 1129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1213 aa Download sequence Send to blast |
MRTSLREAQR RKYAATPTPI TCHRARRTSR HLTYSSGSIP PPASSSRPAG AVARLHARDA 60 CATAPRSGAA GPAVRRSRRA RPNLSAHRQQ GRQVDGIPPS DSDRAGNRHG EMPCMHALRD 120 DPFREQVGGL PIGTLTCHLP RCNSSASEHH TWSHWVAMRS RHVIGGPPMR VESGGRRTAA 180 LSHVEGKEGG DDVRDGRWDR PFCVQPSDLD GDELVDARYC LPGFVSCLSC RESHGRGGRG 240 GGRTGLPVGG LCFPSSREPG PVRTARPTRP THAVVRTIPR RRSGSWLLLV GSRGRLQKKQ 300 QNDENHPTGT AYRNRCRACR WGRTLMRDPG FLGMVCGSSS TPTPDDEVAR RQRQLGELGL 360 LAGAKIGKPA PTFAVTCSSC PAKPNHANER KAPPRWIPPP PPRERTGAHG AQCRATGVDA 420 PGTEHRALPL RQVSHGNPGE TENPVAQPCN RIAALLSTPR GTRFSHARID DAWLAAQARK 480 RGSFSFLSFH ALVFFQPLFA RKISAWRRAK AGSPSNADVR SAVCAAPGYA ARSMGGKWKS 540 QQRNPGLASC SARAFFRDRD GTRINSSVRY DKSTATSTVS DRRQLASFEM NSSEGDRRLS 600 HAAVVPWSFV PACTTPVQRD VALLVARFGF RRLERSMRHV SIAYCTCGID GHRNGSDESV 660 AGNCGRSSSV ITVLPLFRKL QLPEMEIAFF SCLASVPGSV SRDLSATSIA AVGGNSFGSD 720 GGNVKEEGKE ATATAPAHPR VAFKSCLGNR NADTAQIHSH LLFHPLSSHA LLVATLPTLL 780 GRREQAQRPR RVGLVHVAPT TNPSLAGGRG ERTTTQRREN PRRAIKAVRA SEPAGEARHL 840 TSQPRTAQRA TQASIQQQNT RGERIKEGEA GRGEHAARER DRRDGDAVCL SFPGRRRRGR 900 RRPPLIHHHH HYHRLAPPLL PRLPALRVSN GGSSRLRLCD LVVVSFARFL VLTSWGSGGG 960 LGEDAQMSGR WARPLPFTPA QFEELEQQAL IYKYLVAGVA VPPDLVVPIR RGLDSLATRF 1020 YGHPTRTVPV LLFYLLLLTT PSLPYRFWRD WVMLSSRLGL WEHVLVVWDW PKISVAYGSY 1080 FGKKLDPEPG RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVET QLVPQSQPPS 1140 AMAPIAAQPL TAATSGGNFQ SHSLYPAIAG SNGGGEGSNI SSPFTSSLSS SQLNLDNAAT 1200 YAALGGGTGK DLR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036988 | 3e-74 | BT036988.1 Zea mays full-length cDNA clone ZM_BFb0150I14 mRNA, complete cds. | |||
GenBank | KJ727972 | 3e-74 | KJ727972.1 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-37 | growth-regulating factor 5 |