PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g03930.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 363aa    MW: 38710.8 Da    PI: 8.0053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g03930.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09183230455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Zjn_sc00022.1.g03930.1.sm.mk 183 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 230
                                   8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16177244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-10177234No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16179241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-9185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAQCGGDLLS RILHQETVKG LLGLDDDKFG AMCSAFGYLQ EWPELSAMCG NDMAPPDAAN  60
GNDDDSCSAG GGLRKRKPDA CHDAKVRDLC SRKARASLFH KMCLLTSDSG GIVTWQGEHG  120
DGCKRPRGKQ QLSLSDRGEV AGKGKQERPK AGSKKKADAA SPAAGQKTDY IHVRARRGQA  180
TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD EIINYVQSLQ NQVEFLSMKI  240
AASNPVVSFD IVEDLFGRQL KQACNAAASS AMAVPAGQPQ PSCVQMSPMQ QMRLPAGSSG  300
FGLQMVVNSP YPPAPSGPMP AATSGSNAPC LNMNGPAAAA VWDIGSQNFF SGFDAQFQPI  360
ESE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667151e-138BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankKJ7268611e-138KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.11e-141transcription factor bHLH49-like
SwissprotQ8GY611e-48BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A0A9CZD01e-153A0A0A9CZD0_ARUDO; Uncharacterized protein
STRINGSi017630m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-35cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang D,Zhao W,Meng Y,Li H,Liu B
    A CIB1-LIKE transcription factor GmCIL10 from soybean positively regulates plant flowering.
    Sci China Life Sci, 2015. 58(3): p. 261-9
    [PMID:25651969]
  3. Katsura Y, et al.
    An optogenetic system for interrogating the temporal dynamics of Akt.
    Sci Rep, 2015. 5: p. 14589
    [PMID:26423353]
  4. Taslimi A, et al.
    Optimized second-generation CRY2-CIB dimerizers and photoactivatable Cre recombinase.
    Nat. Chem. Biol., 2016. 12(6): p. 425-30
    [PMID:27065233]
  5. Liu Q, et al.
    The Blue Light-Dependent Polyubiquitination and Degradation of Arabidopsis Cryptochrome2 Requires Multiple E3 Ubiquitin Ligases.
    Plant Cell Physiol., 2016. 57(10): p. 2175-2186
    [PMID:27516416]
  6. Pathak GP, et al.
    Bidirectional approaches for optogenetic regulation of gene expression in mammalian cells using Arabidopsis cryptochrome 2.
    Nucleic Acids Res., 2017. 45(20): p. e167
    [PMID:28431041]
  7. Duan L, et al.
    Understanding CRY2 interactions for optical control of intracellular signaling.
    Nat Commun, 2017. 8(1): p. 547
    [PMID:28916751]
  8. Quejada JR, et al.
    Optimized light-inducible transcription in mammalian cells using Flavin Kelch-repeat F-box1/GIGANTEA and CRY2/CIB1.
    Nucleic Acids Res., 2017. 45(20): p. e172
    [PMID:29040770]
  9. Liu Y, et al.
    CIB1 and CO interact to mediate CRY2-dependent regulation of flowering.
    EMBO Rep., 2019.
    [PMID:30126927]