PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g02260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 22076.5 Da PI: 4.7896 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.6e-10 | 21 | 44 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k++w+++ Zjn_sc00022.1.g02260.1.sm.mk 21 RWSKIAARLP-GRTDNEIKNHWNTH 44 7*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.351 | 1 | 49 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.01E-9 | 20 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 21 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-8 | 21 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.93E-8 | 21 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MQLAGRWLVP PKLTAPLVFC RWSKIAARLP GRTDNEIKNH WNTHIKKKLR KMGIDPVTHR 60 PLSPSQSGEP LSQQRQQRQD PPHEREKGRD EPKASSEGPA GSDQDDESEE TPVSGAQPQV 120 AAAPSPASTA ATVSPSCSSS GSASVATPGA DVAAWPDPID LFEVDGMMDL DWAAILSGCG 180 DDGAGMKVDL FDHYPGDGFD EQVWR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964620 | 1e-44 | EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953828.1 | 1e-69 | protein ODORANT1 | ||||
TrEMBL | A0A1E5VPT0 | 3e-69 | A0A1E5VPT0_9POAL; Protein ODORANT1 | ||||
TrEMBL | A0A3L6RR41 | 5e-69 | A0A3L6RR41_PANMI; Protein ODORANT1-like | ||||
STRING | Si020225m | 4e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 2e-23 | myb domain protein 43 |