PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g02250.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 95aa MW: 10819.6 Da PI: 9.1718

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g02250.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lv +G +W+++++ g+ R++k+c++rw +yl Zjn_sc00022.1.g02250.1.sm.mk 14 KGPWTTEEDQKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-22	5	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.991	9	65	IPR017930	Myb domain
SMART	SM00717	2.5E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.72E-20	15	88	IPR009057	Homeodomain-like
CDD	cd00167	6.61E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.7E-7	63	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MGRQPCCEKV GLKKGPWTTE EDQKLVTFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDEEEALVID LHAQLGNRSV RTTST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-16	12	88	5	80	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964620	1e-106	EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149774.1	5e-57	odorant 1 protein
Swissprot	Q9C7U7	3e-51	MYB20_ARATH; Transcription factor MYB20
TrEMBL	A0A3L6F8W0	1e-55	A0A3L6F8W0_MAIZE; Protein ODORANT1
TrEMBL	B6TI05	1e-55	B6TI05_MAIZE; Odorant 1 protein
TrEMBL	K7U498	2e-55	K7U498_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRING	Sb04g028850.1	1e-57	(Sorghum bicolor)
STRING	GRMZM2G055158_P01	3e-56	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	7e-54	myb domain protein 42

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]