PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g00800.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 326aa    MW: 36301.9 Da    PI: 6.5086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g00800.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l d++k++G ++W+  ++  g++R++k+c++rw +yl
  Zjn_sc00022.1.g00800.1.am.mk 14 KGPWTPEEDQKLMDYIKKHGHRSWRPLPKLAGLNRCGKSCRLRWTNYL 61
                                  79********************************************97 PP

2Myb_DNA-binding58.21.9e-1867112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Zjn_sc00022.1.g00800.1.am.mk  67 RGKFTQEEEETILRLHSALGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112
                                   89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.64961IPR017930Myb domain
SuperFamilySSF466899.54E-3211108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002494.4E-171461IPR001005SANT/Myb domain
CDDcd001671.21E-111661No hitNo description
PROSITE profilePS5129427.80762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2965117IPR009057Homeodomain-like
SMARTSM007176.7E-1866114IPR001005SANT/Myb domain
PfamPF002493.6E-1767112IPR001005SANT/Myb domain
CDDcd001671.59E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLMDYIK KHGHRSWRPL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TQEEEETILR LHSALGNKWS AIAKHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DFFAALPQLI ALANLRQLVE QRPWDDHTAS LQAEAVQAAK LQYLQSMLHS  180
AASIATSPSS SSINATPSNL DQIGLLSPQQ MSSLSSLPSP CLLESISDQD IVAGQVSDIQ  240
MPNSFFELPI NNDANQNTDY TAMGRVEGDS STPKTLLMSQ NSLPPLADFP VSNLGDAFST  300
SSCGGSNTQL PSWPELFDEQ FFSEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953959.10.0transcription factor MYB16
SwissprotQ9S9Z21e-105MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A368PSI80.0A0A368PSI8_SETIT; Uncharacterized protein
TrEMBLK3YU390.0K3YU39_SETIT; Uncharacterized protein
STRINGSi017785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-104myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]