PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00021.1.g01570.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 468aa MW: 50063.4 Da PI: 8.4065 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zjn_sc00021.1.g01570.1.am.mk 82 FVCEICGKGFQRDQNLQLHRRGH 104 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.91E-8 | 81 | 104 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 82 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 125 | 155 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.91E-8 | 155 | 180 | No hit | No description |
SMART | SM00355 | 160 | 160 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MFHHQLPLQD QAEAAHQDGG MSNLTSSASG PNNNPPPAPP PPPPAPAASA GNKRKRSLPG 60 NPDPDAEVIA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAA 120 RKKVYVCPEA SCVHHDPARA LGDLTGIKKH FFRKHGEKKW KCDKCSKKYA VHSDWKAHSK 180 ICGTREYKCD CGTIFSRRDS FITHRAFCDA LTEESAKAIG LNAMHAAAPA VLFSPPQPTS 240 QVMQQHQELA AFREHHNHQE VLQPPPQQQV PAAQQQHCNY AMKTEMLPWP MMPYDQHAHP 300 LLQPLCNAAA QCSATSAPLP SAHLSATALL QKAVEMGATI STAGGGGAHY TQMPGAARSA 360 PGSATFGLGL PGLNAQQVDT AMGGLVRSAS HGRSGEDGAS GGGASDGMTR DFLGLRAFSR 420 GDILSLAGFD SCIGAVNANT SVSCYEPQEH AQQPQSNNEP WHGMGSHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-34 | 156 | 222 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 5e-34 | 156 | 222 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 0.0 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969529.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-112 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | K3XHB6 | 0.0 | K3XHB6_SETIT; Uncharacterized protein | ||||
STRING | Si001287m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-95 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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