PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00021.1.g01380.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 41901.8 Da PI: 5.8695 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.6e-08 | 307 | 348 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L Zjn_sc00021.1.g01380.1.sm.mk 307 AARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 348 569******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.066 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 304 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-13 | 304 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.52E-11 | 305 | 353 | No hit | No description |
SMART | SM00353 | 5.8E-13 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-5 | 308 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MVLSESSWSG CCDGSNGVFY GCNMSVLERL VLDEALAAAI LELQQQGIPA AARPAPKVPG 60 SGGVGDSAAF PTMATPTLEY ADVDVDVLQR QQQHRHQDAT GMAADYDLTP AKAAVVAVTS 120 AFTNFTCAVL GDGCRLGDPP VLLCDNETSI TTTASMAMTV TTTSQRCEEG RDGGGRKQRR 180 PSRKRMAADT ASAAPTQESS LYSLLASTTP GDGGIQITFS SSAPAAGNKR SKPSLSSGSS 240 SISFDGRNAG GEDPAYEPDR EALAQVKEMI YRAAAMRPVS LGSELEQASE RPHRRNVRIS 300 SDPQSVAARQ RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QVRDLQTLDR 360 RNYGDTNVNS TTMTGPMSYS NNDSIVPAFA SWQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 308 | 313 | RQRRER |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814680.1 | 1e-106 | transcription factor LATE FLOWERING-like | ||||
TrEMBL | A0A1E5ULC6 | 1e-112 | A0A1E5ULC6_9POAL; Transcription factor bHLH87 | ||||
STRING | Pavir.Eb02113.1.p | 1e-104 | (Panicum virgatum) | ||||
STRING | Si003753m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-34 | bHLH family protein |