PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g05000.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 1225aa    MW: 133116 Da    PI: 9.4225
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g05000.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23806907199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+++
  Zjn_sc00020.1.g05000.1.am.mkhc 806 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 882
                                     89****************************996555555..8999********************************** PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   +++ +el+v+++r+
  Zjn_sc00020.1.g05000.1.am.mkhc 883 KLVAGDSIVFL--RTEHGELCVGIRRA 907
                                     ***********..55999*******97 PP
2Auxin_resp114.59.3e-389621045183
                      Auxin_resp    1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpn 76  
                                      aa+ a+  ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+n
  Zjn_sc00020.1.g05000.1.am.mkhc  962 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWSN 1038
                                      67889999********************************************************************* PP

                      Auxin_resp   77 SkWrsLk 83  
                                      S+Wr+L+
  Zjn_sc00020.1.g05000.1.am.mkhc 1039 SPWRLLQ 1045
                                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-36797909IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28801909IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21804906No hitNo description
PROSITE profilePS5086312.929806908IPR003340B3 DNA binding domain
PfamPF023621.1E-21806907IPR003340B3 DNA binding domain
SMARTSM010191.9E-21806908IPR003340B3 DNA binding domain
PfamPF065073.2E-329621045IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1225 aa     Download sequence    Send to blast
MLGPLRVRPV WCGEAQAGGM PWRHRWETSQ RTVHASLHVS RPSQICVAHG IVPLTLRIQR  60
TAGKTTSSLS IHHRCNIALE ITVYDMSHAA SLCGGCCRRR DAGTTALFDE SAGSAFEQRT  120
SPWRGAGEPP HVRAAPCKGV QCERPMGDGD FAVSLDQLHP VAERAARPVT SRTTNALLLH  180
GPRRAGTARL GTVEAAARRS KIADPEDPMH VPCFRCSPCK TAGAQNSIAT NRHTSAAAVD  240
CRFTARRASK AGLAASDERE GKGSRHAPAG RSPSAATRGA GGVNAGNEKL EQMTTGLCTV  300
ALRTKDGATT ATPSWWSQLV RAACQDRTPI RGNARPTPIR TATHHRLCTV YFTGEGFCCR  360
VNRPNDEHTL EKAERAAMIR NLEAKATYSR WLFLLRLGKS TGQRSRPVAI RVLVVSLSFF  420
HTTIHRNCPR APETDVSDGR VALPENLTNR DGTPLNYAAG DSDISTGVAG GQHSARAAST  480
RGGGRCRKTR PPLRARRLRR WIQREEGTEA HARNRGTDNR ADAGAQIDPR ICVRPGAGNG  540
MIAEDEENPL AGMRGRAGVG CTCHEHHEAS PRARLFAVRA GAADPVGPRF HWAATAAAAG  600
CSHRSCFSPV LFVEGGVVEA AVRRPDSKSQ QQFWCSTIRR SEAMRVGERG IAASLQLLAF  660
RSVGCVGRFG SSLLQLFVGK EEAMKEAAEE RGLDPQLWHA CAGGMVQMPP VRSRVYYFPQ  720
GHAEHAQGGG GGGGAADLAV AVGPRALPAL VLCCVAGVRF LADPETDEVF AKIRLVPVAP  780
GEADFRDEHD ELGGDPAEAR DKLPSFAKTL TQSDANNGGG FSVPRYCAET ILPKLDYRAD  840
PPVQTVLAKD VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRTEHGEL  900
CVGIRRAKRV SFGGMECMSG WNAPGYGAFS AFMKEEENKL MKGAGGYTRG RGKVKIADVV  960
DAASLAARCQ PFEVVYYPRA STPEFVVKAA LVQNAMRIQW CPGMRFKMAF ETEDSSRISW  1020
FMGTIASVQV ADPIRWSNSP WRLLQVTWDE PDLLQNVKCV NPWLVELVSS IPPIHLGPFS  1080
PPRKKLRVPQ HPDFPFDGQL LNPIFRGNPL GPSNSPLCCF PDNAPAGIQG ARHAQFGLSL  1140
TDHQLNRLGP GLFQGELYGQ LADMFGIEKA EIISQLRYHD AAGAVKHAGD EPFSDFMKVV  1200
RRLTIIEGSE GRLQKPLMEC VVEQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-72682107035392Auxin response factor 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16