PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g03940.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 428aa    MW: 47719.5 Da    PI: 9.0172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g03940.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-102763144585
                                   EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                            B3  45 sWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                   +W ++     + ++yvltkGW +Fvk+++L +gD+v F++ 
  Zjn_sc00020.1.g03940.1.sm.mk 276 TWLLTP--AESYKTYVLTKGWMSFVKEKRLSTGDIVSFYRR 314
                                   566666..677889************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF083183.6E-5776IPR013167Conserved oligomeric Golgi complex, subunit 4
PROSITE profilePS508638.6276332IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-8278318IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-9283331IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASAAGGNEG PDPRKIELYL EEILALAQLG EDYTEFMVNK IRGLRDVKPE LGPQAMRAFR  60
NGSFNKMEQH LTGFYLLRRC RRVASTASIN SVLAVLGGAT SLLSNEYQEA LQWRMREPNL  120
GAKLFLGGVG VQKNGEEIAT ALNNMDLSSD YELDDAEYGE NEVNDPWVQK LILAVNTNVA  180
WLQPVRTSNN YDSFVHLIID FIVKRLEVIL MQKRFSQLGG LQLDKEVRSL INHFSELSQK  240
PVRDKFSRLS QMSTILNFER VSEILDFWGN NAGHLTWLLT PAESYKTYVL TKGWMSFVKE  300
KRLSTGDIVS FYRRVGDATG INHGFVFVKK QDPGSSMPPS TPPKKLTPFG TLNDNWLLKA  360
FSSSGHYTAG LACKHPNLPN LQPALIPQRV SLGSCIGPAK KRVRLFGVDL NPNCNESFHG  420
HGNANGVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hr0_A4e-36144290103249CoG4
3hr0_B4e-36144290103249CoG4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for normal Golgi function. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615521e-131BT061552.1 Zea mays full-length cDNA clone ZM_BFb0157G15 mRNA, complete cds.
GenBankBT0849221e-131BT084922.2 Zea mays full-length cDNA clone ZM_BFb0207C05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823922.11e-133conserved oligomeric Golgi complex subunit 4
SwissprotQ8L8381e-64COG4_ARATH; Conserved oligomeric Golgi complex subunit 4
TrEMBLA0A2T7F6C31e-133A0A2T7F6C3_9POAL; Uncharacterized protein
STRINGPavir.J13795.1.p1e-130(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.14e-10B3 family protein