PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00020.1.g02760.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1010aa MW: 109587 Da PI: 9.8602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00020.1.g02760.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1.1e-07	900	948	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r+r+ eE l++++ +++Gg+ Wk +++ +++t+ q+ s+ qk++ Zjn_sc00020.1.g02760.1.am.mk 900 RDRFRVEEASLFLEGLEKYGGRgKWKEMSSKYLTTKTPSQIASHHQKHR 948 78999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.100	2.8E-13	52	118	No hit	No description
SuperFamily	SSF55008	3.93E-11	54	111	IPR006121	Heavy metal-associated domain, HMA
Pfam	PF00403	7.7E-13	56	112	IPR006121	Heavy metal-associated domain, HMA
PROSITE profile	PS50846	9.682	60	111	IPR006121	Heavy metal-associated domain, HMA
CDD	cd00371	2.77E-9	60	118	No hit	No description
SuperFamily	SSF55008	9.95E-11	157	226	IPR006121	Heavy metal-associated domain, HMA
Gene3D	G3DSA:3.30.70.100	1.6E-13	160	222	No hit	No description
CDD	cd00371	1.92E-8	161	221	No hit	No description
Pfam	PF00403	2.0E-12	162	213	IPR006121	Heavy metal-associated domain, HMA
PROSITE profile	PS50846	9.057	166	199	IPR006121	Heavy metal-associated domain, HMA
SMART	SM00717	9.6E-4	899	950	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-5	900	947	IPR009057	Homeodomain-like
CDD	cd00167	0.00631	902	943	No hit	No description
SuperFamily	SSF46689	3.84E-7	906	953	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030001	Biological Process	metal ion transport
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence Send to blast
MGEEGRSKEA AAAGKATTVP AAAVEEEKKK GDAGGGAEEK KEDAATPQPP PEEVVMRVFM 60 HCEGCARKVK KILKGFDGVE DVSADSKAHK VVVKGKKAAA DPMKVVERVQ KKTSRKVELL 120 SPLPQPKEEE EKKEEKKEEP AEPPKPEEKK AEEKPTVVSV VLKVHMHCEA CAQVIKKKIL 180 KMKGVESAEP DLKASHVTVK GVFEDAKLAD YVHRRTGKHA KIVKSEPVAA ENAGDCNAKD 240 DKKADAGGEK RDDIKEEKKD KDASNAGGAE EKDPVHYPNL YTHYPRYAKV QRCGRVHLMH 300 MVRPSSQLSR ASSSWIQPNL VLKEKQRHSP SPVAESEAAK QTQQRQASNH VLPVGCCKWN 360 PVKAPPKSKV DTSAAAGLHS SSVQEKRRGH WAVAWRRDRD LTVRCRAHQS LVIPHSMLHS 420 TPVLPRQPGS SGNYMRRQQV AAERRAPLRH GVVNVDEADH LDPDDWVLEF IASSASAADR 480 GHELDRRKER KIMKLVALRI QGLSRRDVPG RRTLHGCCGH HLGLDYLFVN ADQGLRTYGS 540 TAAADVMTVR EEPATAAEEK GLLPTSSKAD GKHTDLMTCY DSNKWAKHRT WPPPEKEAAA 600 YVMTMGEEPA PAADEKDLVP TSSKADGKHA DHMTGYAASN KKSAEHPTSP PPEWEATAYL 660 MTAGEEAAPG AEDKHTDLMT WYASRREIEH PNSPPPQREA APAAEKDSVP TSSKVGGEEP 720 EDAAKKTEPD SRKRKKPERW TKEEHKKSAV EISKEFGDGG GLQKTVGAVG WSGGAAVGAK 780 PDLDGGLDLD GVEVRAVRLR WRRCGGGRGG GAAARVKARA VVEAGRRREG GGWGCGGGEV 840 GGKGCGGGAV RGRGWGGCAV GGRGWGGGEV GGRGWGGGVA AKTKAGPGQR RRRENEEPPR 900 DRFRVEEASL FLEGLEKYGG RGKWKEMSSK YLTTKTPSQI ASHHQKHRHR LEQMKRNGCK 960 RRSIHDTITP TTSSSTFGTA AVTPASRSAW GLGIADCCGG AGVWVRRNRS

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence Send to blast

MGEEGRSKEA AAAGKATTVP AAAVEEEKKK GDAGGGAEEK KEDAATPQPP PEEVVMRVFM  60
HCEGCARKVK KILKGFDGVE DVSADSKAHK VVVKGKKAAA DPMKVVERVQ KKTSRKVELL  120
SPLPQPKEEE EKKEEKKEEP AEPPKPEEKK AEEKPTVVSV VLKVHMHCEA CAQVIKKKIL  180
KMKGVESAEP DLKASHVTVK GVFEDAKLAD YVHRRTGKHA KIVKSEPVAA ENAGDCNAKD  240
DKKADAGGEK RDDIKEEKKD KDASNAGGAE EKDPVHYPNL YTHYPRYAKV QRCGRVHLMH  300
MVRPSSQLSR ASSSWIQPNL VLKEKQRHSP SPVAESEAAK QTQQRQASNH VLPVGCCKWN  360
PVKAPPKSKV DTSAAAGLHS SSVQEKRRGH WAVAWRRDRD LTVRCRAHQS LVIPHSMLHS  420
TPVLPRQPGS SGNYMRRQQV AAERRAPLRH GVVNVDEADH LDPDDWVLEF IASSASAADR  480
GHELDRRKER KIMKLVALRI QGLSRRDVPG RRTLHGCCGH HLGLDYLFVN ADQGLRTYGS  540
TAAADVMTVR EEPATAAEEK GLLPTSSKAD GKHTDLMTCY DSNKWAKHRT WPPPEKEAAA  600
YVMTMGEEPA PAADEKDLVP TSSKADGKHA DHMTGYAASN KKSAEHPTSP PPEWEATAYL  660
MTAGEEAAPG AEDKHTDLMT WYASRREIEH PNSPPPQREA APAAEKDSVP TSSKVGGEEP  720
EDAAKKTEPD SRKRKKPERW TKEEHKKSAV EISKEFGDGG GLQKTVGAVG WSGGAAVGAK  780
PDLDGGLDLD GVEVRAVRLR WRRCGGGRGG GAAARVKARA VVEAGRRREG GGWGCGGGEV  840
GGKGCGGGAV RGRGWGGCAV GGRGWGGGEV GGRGWGGGVA AKTKAGPGQR RRRENEEPPR  900
DRFRVEEASL FLEGLEKYGG RGKWKEMSSK YLTTKTPSQI ASHHQKHRHR LEQMKRNGCK  960
RRSIHDTITP TTSSSTFGTA AVTPASRSAW GLGIADCCGG AGVWVRRNRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	731	735	RKRKK
2	870	877	GGRGWGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44016	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-11	MYB family protein