PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00020.1.g02380.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 17757.3 Da PI: 9.4475 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Zjn_sc00020.1.g02380.1.sm.mk 28 YICEVCHKGFQRDQNLQLHRRGH 50 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H + + Zjn_sc00020.1.g02380.1.sm.mk 104 WKCDRCSKKYAVQSDWKAHTKIC 126 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-7 | 27 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-6 | 27 | 50 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.038 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 28 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 47 | 69 | 99 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 92 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.05E-7 | 99 | 124 | No hit | No description |
SMART | SM00355 | 230 | 104 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVHDIHLADP DVEIVALSPK TLLATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRS 60 STEAKKKVYV CPELTCPHHD ASRALGDLTG IKKHYSRKHG EKKWKCDRCS KKYAVQSDWK 120 AHTKICGTKE YRCDCGTIFS SYQTVSSADV VQYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-20 | 100 | 140 | 3 | 43 | Zinc finger protein JACKDAW |
5b3h_F | 5e-20 | 100 | 140 | 3 | 43 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184881 | 1e-156 | KF184881.1 Saccharum hybrid cultivar R570 clone BAC 172K24 complete sequence. | |||
GenBank | KF184912 | 1e-156 | KF184912.1 Saccharum hybrid cultivar R570 clone BAC 254D06 complete sequence. | |||
GenBank | KF184946 | 1e-156 | KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818794.1 | 2e-95 | protein indeterminate-domain 2-like | ||||
Swissprot | Q8GYC1 | 2e-84 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q9SCQ6 | 1e-84 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A059Q1N6 | 9e-97 | A0A059Q1N6_9POAL; Zinc finger protein | ||||
STRING | Pavir.Aa01904.1.p | 1e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11425 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 6e-87 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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