PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00020.1.g01360.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 791aa MW: 88218.5 Da PI: 6.9818

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00020.1.g01360.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.8	4.4e-21	288	384	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++ + +kk++W+ vs +m +rgf++sp+qC++k+++lnkryk+++e+ + Zjn_sc00020.1.g01360.1.am.mk 288 KWTSNMVKLLVSAVSYIDEDVEVDHgsgsgrrkhamlKKKGKWKLVSMAMNQRGFSVSPQQCEDKFNDLNKRYKRLTEILG 368 7************9999999764456677889999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zjn_sc00020.1.g01360.1.am.mk 369 RGrACEIVEKPALLEK 384 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.3E-20	286	411	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MGPPPRRKVR WIPSEKRRSS FLAGVSDLLR PPSLVPFPPA SGGHHGRAGA YVRSRVVRGA 60 HTPDSPLRPN APHRTPPAPR HRQLGSTSSS SRPRRSRFIT FLVRLVPLPP TNRARAQRRE 120 GKEEKAKRNH KVLFLGMVMT PSRFSLLDSV SFAVENGEFR PIRPEIGPGN STKRATPLWR 180 GVVLVSRVLL LQEGRSLGIG EVCSMEGDLP PRALIPGSPF DLEPSMQQQQ QLHFAQPHVH 240 QGVFAVPANP VQELGNVVKT SLSDEEDADD GHHDHGKAAA ASQWHRVKWT SNMVKLLVSA 300 VSYIDEDVEV DHGSGSGRRK HAMLKKKGKW KLVSMAMNQR GFSVSPQQCE DKFNDLNKRY 360 KRLTEILGRG RACEIVEKPA LLEKISLSAK LKEEAKKHLN SKHLHYEEMC SYHNRNRFCL 420 LDDPALQKSL RMALRSGDEE GRKNSFGYED EDDHALFSDE DDEDDECNDY LEISAEDRHH 480 RVHSTKKLKH DHEETHCGSH LSEVAAFDMN KMLSEGSRGA ASEKNRSGMH SNQIEQERLK 540 IKSQMLKIEQ RHLKWLRFSK EKDRELEKMR LENEKMALEN ERMELELKLK EIEMEFSERR 600 LVSQVEEPDE TPDPALQMPS STQRSFDSRC LFLQRLGNVD TSCLQAPAMG ACATKSGDLK 660 NVKGEPPLVV EDAVAPRVAE GEKAKADGVP VAAETTDPAD VSRRRSLSDL LKEDAEASDE 720 EAGQDAVKVV AEDSVVAADV EAGAPESVSE EAEAAKAPPV AVQPSDAVVE QDAAAEQPTD 780 ERPIPSVRVL S

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MGPPPRRKVR WIPSEKRRSS FLAGVSDLLR PPSLVPFPPA SGGHHGRAGA YVRSRVVRGA  60
HTPDSPLRPN APHRTPPAPR HRQLGSTSSS SRPRRSRFIT FLVRLVPLPP TNRARAQRRE  120
GKEEKAKRNH KVLFLGMVMT PSRFSLLDSV SFAVENGEFR PIRPEIGPGN STKRATPLWR  180
GVVLVSRVLL LQEGRSLGIG EVCSMEGDLP PRALIPGSPF DLEPSMQQQQ QLHFAQPHVH  240
QGVFAVPANP VQELGNVVKT SLSDEEDADD GHHDHGKAAA ASQWHRVKWT SNMVKLLVSA  300
VSYIDEDVEV DHGSGSGRRK HAMLKKKGKW KLVSMAMNQR GFSVSPQQCE DKFNDLNKRY  360
KRLTEILGRG RACEIVEKPA LLEKISLSAK LKEEAKKHLN SKHLHYEEMC SYHNRNRFCL  420
LDDPALQKSL RMALRSGDEE GRKNSFGYED EDDHALFSDE DDEDDECNDY LEISAEDRHH  480
RVHSTKKLKH DHEETHCGSH LSEVAAFDMN KMLSEGSRGA ASEKNRSGMH SNQIEQERLK  540
IKSQMLKIEQ RHLKWLRFSK EKDRELEKMR LENEKMALEN ERMELELKLK EIEMEFSERR  600
LVSQVEEPDE TPDPALQMPS STQRSFDSRC LFLQRLGNVD TSCLQAPAMG ACATKSGDLK  660
NVKGEPPLVV EDAVAPRVAE GEKAKADGVP VAAETTDPAD VSRRRSLSDL LKEDAEASDE  720
EAGQDAVKVV AEDSVVAADV EAGAPESVSE EAEAAKAPPV AVQPSDAVVE QDAAAEQPTD  780
ERPIPSVRVL S

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-65	sequence-specific DNA binding transcription factors