PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g01310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 440aa    MW: 47048.4 Da    PI: 10.202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g01310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11228274454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   +h   Er RR+r+++ f+eL+ llP  +     +K +Ka+i  +A+ +Ik L
  Zjn_sc00020.1.g01310.1.am.mk 228 SHIFTERERRKRMRNMFAELKALLPDvP-----EKADKAAIIGEAISFIKVL 274
                                   67889*********************77.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-14221285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-11222275No hitNo description
PROSITE profilePS5088814.018224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13227288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-9230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.369364440IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDLVGLGHDG SSQESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAASSR TRKFCTGLAP  60
RPRWRRGARS RLFAPPPCID QVTANRTFVF EFSLSRSATI PRIAAQKQAK QETVTSEETD  120
GRRARKVAAC SRQGTDASSD HGSAPPAPGV TVTALSPGES SNSGPCAGVP VVAEEDAGKG  180
KDVVVEHGSG GSGHSDARVL PKGKRSAAEA LAREFEDAAS GRKKLMSSHI FTERERRKRM  240
RNMFAELKAL LPDVPEKADK AAIIGEAISF IKVLEGNVTT LQKRKQDLVL ARLAAAAVVN  300
HVAATSAPPP PGTPLAAAAS SDDLPRGWAW LPKQQEQKPA ASPVGFQSWC GTNVVLSVSK  360
DDALISVSAP NHPGLLVLLM SVLLKHRLDV LTAHVESDGD RRLYSFHARV KAVRMRGGEP  420
PASEDIYKLA VSEIIIWLST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926GRRRPEKQ
2221238RKKLMSSHIFTERERRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-22bHLH family protein