PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00020.1.g01250.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 913aa MW: 95133.1 Da PI: 10.3455

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00020.1.g01250.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	225	268	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 W++eEd l+ a++++G g+W+ I + + +Rt q+ rw Zjn_sc00020.1.g01250.1.sm.mkhc 225 TWSKEEDVDLAAAIQKYGEGNWEIILDKCNfrSTRTSDQLSQRW 268 7***************************************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-10	217	270	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.311	218	277	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-10	221	280	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	222	274	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-7	225	268	IPR001005	SANT/Myb domain
CDD	cd11660	2.71E-14	226	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MAATTAPAAG MGKGKRKRPL SEDDVYLILH RSVLLPRSTT AACRAILRRY APATILTALQ 60 EVAEHAQGRR IDWKALVGKS ATGITSAREY QMLWRHFAYQ HELAESIDAG SSPLGDDSDL 120 ECELEPVPNP SKEVLSEASS LAKILISGSS HEQASGHRVN LETSAQNSAN GKIVRVPSDK 180 QLAQNQRLTN VSGPISNSKQ TSQTGPSPDP SDANGASKKK KKIKTWSKEE DVDLAAAIQK 240 YGEGNWEIIL DKCNFRSTRT SDQLSQRWAL ISKRPGLSKP ATTKQVSITS SEERMATRKA 300 LSMAVDYNPC TRKPSAVRLG AQQFSSQHTS TVFGTTIPEI KSAAAPFAAP RQAPVPIQAP 360 VTMPLPVTVQ VLAPVQQAQQ APAQVPPPKP NASNKTRNNS KKQVVPQNPP VVSCSIQAAA 420 IAAGGRIATP TAAANHLKAT QSKNAVHIKT RVAVSSKSST CSKGSNIVVE PRTQIGGAEH 480 IELSNTAATI SAPSILLTHA AQQILDISEV SAANPPGPPS GVHFTDTKKA LSASAVPASC 540 DSEEQDDDDT ICMVTMEDLF PEDANQPESV NPKEKQPEAI GPRERQQDSI DLKEKQQGVL 600 GLKTKQPETK NLRVEGIVGS KDADMLEFDQ FVASQGGTSV KTDYLDTSNT VRSAPTTQGS 660 TGSQKKQLKS VPAAGRGNSI YSATPSSGKK TKVPHPVSLM PTGTPWVNVS AHSTAQNKPV 720 EKKTAAPATS SGQNLLMKKQ AVNTKGNQTP NSVAVGVTSV APGSSMASTV VNAAGKLNPP 780 GSNLAGMVVN VAGKLNQPGS SYAGTVVNTA GKVNPPPPGR GSSPVGTMVN VAGKANPPGR 840 SPASSVVIAP GKVNPPGSSQ AGTVVNGASK ANPPGSSQTS TLVNGSSKVN PPGPSQASKV 900 VSGVSKVNPP ANQ

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MAATTAPAAG MGKGKRKRPL SEDDVYLILH RSVLLPRSTT AACRAILRRY APATILTALQ  60
EVAEHAQGRR IDWKALVGKS ATGITSAREY QMLWRHFAYQ HELAESIDAG SSPLGDDSDL  120
ECELEPVPNP SKEVLSEASS LAKILISGSS HEQASGHRVN LETSAQNSAN GKIVRVPSDK  180
QLAQNQRLTN VSGPISNSKQ TSQTGPSPDP SDANGASKKK KKIKTWSKEE DVDLAAAIQK  240
YGEGNWEIIL DKCNFRSTRT SDQLSQRWAL ISKRPGLSKP ATTKQVSITS SEERMATRKA  300
LSMAVDYNPC TRKPSAVRLG AQQFSSQHTS TVFGTTIPEI KSAAAPFAAP RQAPVPIQAP  360
VTMPLPVTVQ VLAPVQQAQQ APAQVPPPKP NASNKTRNNS KKQVVPQNPP VVSCSIQAAA  420
IAAGGRIATP TAAANHLKAT QSKNAVHIKT RVAVSSKSST CSKGSNIVVE PRTQIGGAEH  480
IELSNTAATI SAPSILLTHA AQQILDISEV SAANPPGPPS GVHFTDTKKA LSASAVPASC  540
DSEEQDDDDT ICMVTMEDLF PEDANQPESV NPKEKQPEAI GPRERQQDSI DLKEKQQGVL  600
GLKTKQPETK NLRVEGIVGS KDADMLEFDQ FVASQGGTSV KTDYLDTSNT VRSAPTTQGS  660
TGSQKKQLKS VPAAGRGNSI YSATPSSGKK TKVPHPVSLM PTGTPWVNVS AHSTAQNKPV  720
EKKTAAPATS SGQNLLMKKQ AVNTKGNQTP NSVAVGVTSV APGSSMASTV VNAAGKLNPP  780
GSNLAGMVVN VAGKLNQPGS SYAGTVVNTA GKVNPPPPGR GSSPVGTMVN VAGKANPPGR  840
SPASSVVIAP GKVNPPGSSQ AGTVVNGASK ANPPGSSQTS TLVNGSSKVN PPGPSQASKV  900
VSGVSKVNPP ANQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952835.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBL	K3YPR8	0.0	K3YPR8_SETIT; Uncharacterized protein
STRING	Si016260m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-40	MYB_related family protein