PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00020.1.g00610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 384aa MW: 41505.8 Da PI: 9.2338

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00020.1.g00610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.9	7.1e-15	62	143	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s qCk++++ l+k+yk +++ +++ + Zjn_sc00020.1.g00610.1.am.mk 62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDAQCKNRIDTLKKKYKVERAKRNS-------S 135 ***********************************87889987333667**********99998886.......5 PP trihelix 79 cpyfdqle 86 +p+fd+l+ Zjn_sc00020.1.g00610.1.am.mk 136 WPFFDRLD 143 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-23	60	145	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDDDAGASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGGGGRED 60 AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKPPKS DAQCKNRIDT 120 LKKKYKVERA KRNSSWPFFD RLDDLLAPVY KLGSGSSSAA RNTPPMVPPR FSFPQRTRTQ 180 LQPSAGVKRR MPSPPPKPSA SSDSSDGFPP EPPLANGKRQ RVEEPTPANG AESGDHAQGL 240 RELALAIRRL GEVYERVESA KREQELRMEQ ERLEATRELE DQRVQFFLKM QMELSKATGG 300 AHSATPMAAA TAVDGNGSRR AAEATDVATS SNHKVRYRIK DSRHRHTAQQ PHYQYSQNNS 360 SAAAPSSGNG SDSDNKEDED EESQ

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDDDAGASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGGGGRED  60
AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKPPKS DAQCKNRIDT  120
LKKKYKVERA KRNSSWPFFD RLDDLLAPVY KLGSGSSSAA RNTPPMVPPR FSFPQRTRTQ  180
LQPSAGVKRR MPSPPPKPSA SSDSSDGFPP EPPLANGKRQ RVEEPTPANG AESGDHAQGL  240
RELALAIRRL GEVYERVESA KREQELRMEQ ERLEATRELE DQRVQFFLKM QMELSKATGG  300
AHSATPMAAA TAVDGNGSRR AAEATDVATS SNHKVRYRIK DSRHRHTAQQ PHYQYSQNNS  360
SAAAPSSGNG SDSDNKEDED EESQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965091	1e-138	EU965091.1 Zea mays clone 283747 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815450.1	1e-167	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-36	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2T7F7W0	1e-166	A0A2T7F7W0_9POAL; Uncharacterized protein
STRING	Pavir.J27535.1.p	1e-169	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	3e-37	sequence-specific DNA binding transcription factors