PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g04270.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 346aa MW: 38278.8 Da PI: 8.0871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g04270.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.9	3e-19	37	106	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt e+++Liea+r+++e+ g + ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e + Zjn_sc00019.1.g04270.1.am.mk 37 WTLPETMQLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYEMAG 106 ****************************************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.909	29	93	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.7E-5	31	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-6	32	95	IPR009057	Homeodomain-like
Pfam	PF13837	7.1E-13	35	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGGFSGVPHS QQGSDQEARN GALPLITASR AYRRGNWTLP ETMQLIEAKR KVHEERHPGD 60 QGLARWRWVE DYCWRAGCRR SQNQCNDRWD NLMRDYKKVR AYEMAGRAPS YWAMGRAERK 120 EKGLPSNLLR EVYDAMAEVV ERKKMSTGCS GGAGGMYLGP SSSFLDIPLQ ASPLAQVLPP 180 AMPQPLGPQE QVTRGQGVPQ FSSESLERKR RRSSLDEQLP ESGTPDPGTH FHHQEHEHPR 240 DRLKDDRCDG SSDGDSDDEE AVLSGAIGRC AAILSEALEN REAAEERRHR EVMAVEERRG 300 RALQARRKAG EQCVAELAAA VNQLAGSMLA LAGAKHKGGH GPAAPK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGGFSGVPHS QQGSDQEARN GALPLITASR AYRRGNWTLP ETMQLIEAKR KVHEERHPGD  60
QGLARWRWVE DYCWRAGCRR SQNQCNDRWD NLMRDYKKVR AYEMAGRAPS YWAMGRAERK  120
EKGLPSNLLR EVYDAMAEVV ERKKMSTGCS GGAGGMYLGP SSSFLDIPLQ ASPLAQVLPP  180
AMPQPLGPQE QVTRGQGVPQ FSSESLERKR RRSSLDEQLP ESGTPDPGTH FHHQEHEHPR  240
DRLKDDRCDG SSDGDSDDEE AVLSGAIGRC AAILSEALEN REAAEERRHR EVMAVEERRG  300
RALQARRKAG EQCVAELAAA VNQLAGSMLA LAGAKHKGGH GPAAPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	211	RKRRR
2	207	212	RKRRRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962106	1e-88	EU962106.1 Zea mays clone 240234 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792444.1	1e-146	uncharacterized protein LOC112873645
TrEMBL	A0A3L6SE93	1e-146	A0A3L6SE93_PANMI; Uncharacterized protein
STRING	Pavir.J22454.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-41	Trihelix family protein