PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g03930.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 279aa    MW: 29034.9 Da    PI: 8.2579
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g03930.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.38e-361102031100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrr+Ca++Cv+apyfp ++p+kfan+hk+FGasn      ++p ++r da+sslvyeA+ar+rdPvyG+v+ i+
  Zjn_sc00019.1.g03930.1.am.mk 110 PCAACKLLRRRCAAGCVFAPYFPPAEPRKFANMHKVFGASN------DIPVQHRGDAVSSLVYEANARVRDPVYGCVAAIS 184
                                   7**************************************97......789999**************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                   +lqqq+e+l+++lal+++e
  Zjn_sc00019.1.g03930.1.am.mk 185 SLQQQVETLQTQLALAQAE 203
                                   ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.089109204IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-35110201IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MHHAREGIAE NNAVECLLFG RPRSSADQAR RECKRADLRF RVRSVCRSGA VRLGCAAMLS  60
AIPSVVHPHG GASAADDAAA RSAPGSSAMR DEVAVAGSGG GGGGAGATAP CAACKLLRRR  120
CAAGCVFAPY FPPAEPRKFA NMHKVFGASN DIPVQHRGDA VSSLVYEANA RVRDPVYGCV  180
AAISSLQQQV ETLQTQLALA QAEMVKLSMS NADMAHRLKA VCGSCGGGGS STSTGSPSSM  240
SSPKMERTEA HCECNATPQL LDTVVDQPYS VDGSLLWPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-431062277121LOB family transfactor Ramosa2.1
5ly0_B9e-431062277121LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466719.15e-64LOB domain-containing protein 4 isoform X1
TrEMBLA0A3L6TSK82e-67A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRINGSb01g012810.12e-63(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-28LOB domain-containing protein 4