PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g02130.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 445aa MW: 46084.3 Da PI: 10.8822

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g02130.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.6	1.8e-35	285	341	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + Zjn_sc00019.1.g02130.1.am.mk 285 QGEQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 341 5679*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.5E-31	286	339	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	287	341	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-23	288	334	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	289	325	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MPCKGPGRGQ QHARRWNAPS SGVVPDRSRC MATESAAYAG AHSGARRLLL LPAGIGVGAG 60 RSAAGGCCRL LGIGGGRLPA FVRRPDVTGR VKGCRRPSLL PGPMVLASSC RRDEEATGGS 120 RTARRVRLGC GLRPGAHGSD KNTSATAVLA MEWMDPTRTA ILSGVVWRPE DDRQMMEGLA 180 PGLHGKLRLF SGSTSARAHL SRPAKTSTTM AGQQAPVSLA QLQANDKICD HLGTPAAATM 240 SASVSCGAAT TTTTAAEMAY LRQLQLQQAA DANNSNNGNG GGGSQGEQCP RCASHDTKFC 300 YYNNYNTSQP RHFCRACRRY WTLGGSLRNV PIGGSTRKRP RFAHPPRRHP PAAHVGRGGA 360 GFDLGLGLTV PGGAAFGGAG EMQGLGVRGG LGGTSALLWP AGLLDSDSVD VWKAPGVGAA 420 MWPEFSAAAA PPQTSGLLHG GVQLM

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MPCKGPGRGQ QHARRWNAPS SGVVPDRSRC MATESAAYAG AHSGARRLLL LPAGIGVGAG  60
RSAAGGCCRL LGIGGGRLPA FVRRPDVTGR VKGCRRPSLL PGPMVLASSC RRDEEATGGS  120
RTARRVRLGC GLRPGAHGSD KNTSATAVLA MEWMDPTRTA ILSGVVWRPE DDRQMMEGLA  180
PGLHGKLRLF SGSTSARAHL SRPAKTSTTM AGQQAPVSLA QLQANDKICD HLGTPAAATM  240
SASVSCGAAT TTTTAAEMAY LRQLQLQQAA DANNSNNGNG GGGSQGEQCP RCASHDTKFC  300
YYNNYNTSQP RHFCRACRRY WTLGGSLRNV PIGGSTRKRP RFAHPPRRHP PAAHVGRGGA  360
GFDLGLGLTV PGGAAFGGAG EMQGLGVRGG LGGTSALLWP AGLLDSDSVD VWKAPGVGAA  420
MWPEFSAAAA PPQTSGLLHG GVQLM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	4e-77	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP63439	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-24	DOF zinc finger protein 1