PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g07130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 368aa    MW: 38217.7 Da    PI: 8.1747
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g07130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.23.5e-323692459
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                                   +Y+eC++NhAaslGghavDGCgEfmp +g++ +++++l+CaACgCHRnFHRr+ve 
  Zjn_sc00018.1.g07130.1.am.mk 36 PKYRECRRNHAASLGGHAVDGCGEFMPLPGADaADPSSLNCAACGCHRNFHRRTVEG 92
                                  58******************************99*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.8E-293789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-273790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-193888IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8893889IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.81E-16208278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28212279IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-23220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDAMDVKQYK AVVFPNGGVA KKVKPAAVAP AVVGEPKYRE CRRNHAASLG GHAVDGCGEF  60
MPLPGADAAD PSSLNCAACG CHRNFHRRTV EGSAPPPSPA LPAPVVHGQP QRREETPEDR  120
LPAVVDGDDS DSDSDSDASE YDEERSVSLP PPTQLHNVPV PVAQQPPPPP PSYPSAAPHM  180
LLSLGSVAPG TAMAAAARLP AHQLTSPSSA PTPGGGAAPR KRFRTKFTAE QKQRMQELSE  240
RLGWRLQKRD EAIVDEWCRD IGVGKGVFKV WMHNNKHNFL GGHSARRSAS ASAGAPTAAA  300
AAALHNHTPT AAGSAPPFHP SAPSPPPPPV LTSSSPGATG FININGAASS APASYQEKIN  360
GSSSPQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-202202781775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.21e-127uncharacterized protein LOC100279452
SwissprotQ6ER214e-88ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLB6TFI11e-125B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBLK0DG721e-125K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRINGGRMZM2G161315_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-24homeobox protein 34