PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g05000.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 346aa    MW: 37728 Da    PI: 6.7782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g05000.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd  l+ +++++G+g +W   ++++g++R++k+c++rw++yl
  Zjn_sc00018.1.g05000.1.sm.mk 14 KGPWSAEEDAVLKAYIEEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP

2Myb_DNA-binding39.99.9e-1370111346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    +++eEd  +  +    G++ W+tIa+ ++ gRt++++k++w++
  Zjn_sc00018.1.g05000.1.sm.mk  70 GFSKEEDRVICSLYISIGSR-WSTIAAQLP-GRTDNDVKNHWNT 111
                                   69******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.57962IPR017930Myb domain
SuperFamilySSF466899.8E-2712109IPR009057Homeodomain-like
SMARTSM007171.6E-121364IPR001005SANT/Myb domain
PfamPF002495.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-231569IPR009057Homeodomain-like
CDDcd001672.11E-91662No hitNo description
PROSITE profilePS5129421.15963117IPR017930Myb domain
SMARTSM007172.0E-1067115IPR001005SANT/Myb domain
PfamPF002492.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2270117IPR009057Homeodomain-like
CDDcd001675.61E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSAE EDAVLKAYIE EHGTGGNWIQ LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FSKEEDRVIC SLYISIGSRW STIAAQLPGR TDNDVKNHWN TKLKRRLLGG  120
SRRPRVGERF LLMDAMSSQP QNSFTTSALE RMQLGLGLQR RHERLDSSPA FTLYNYSGSL  180
GATPTWPSPS PSPAASDSSE MWRRQLPRAA STGHSAGFRS HMQSSFSYAC AAGILPESMD  240
GTCTPPMSTS TSEIAAVGME SSSSTPTASS GASATFGSME DEIDMLLRQF QSFEGDGHGD  300
DVANGLDYFF GELDHVALDG SNGTWSSCST PGVDSVFQDF VQGYDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632601e-140BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.11e-153transcription factor MYB36-like
SwissprotQ9FKL21e-75MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3L6T8501e-153A0A3L6T850_PANMI; Transcription factor MYB35-like
STRINGPavir.Aa03183.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-72myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]