PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g04940.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 144aa MW: 15622.5 Da PI: 7.9931

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g04940.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Zjn_sc00018.1.g04940.1.sm.mk 32 FVCMYCDRKFYSSQALGGHQNAH 54 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.51E-8	26	78	No hit	No description
PROSITE profile	PS50157	10.803	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MDCEGNSVME QELNLELTLL HRSASPEPPG FFVCMYCDRK FYSSQALGGH QNAHKYERSL 60 AKRRREVAAA MRAHGAAASG TSRDAAARSG GASAAVAADK RARMDDQLQD AATVCALELG 120 NKKRSSEHGY GVHRADELDL SLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963282	6e-61	EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds.
GenBank	EU972402	6e-61	EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds.
GenBank	EU973130	6e-61	EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956890.1	7e-51	uncharacterized protein LOC101776967
Swissprot	Q39261	4e-14	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A0A9HWN6	3e-61	A0A0A9HWN6_ARUDO; Uncharacterized protein
STRING	Pavir.J15401.1.p	6e-55	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-15	zinc finger protein 2