PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g04120.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 921aa MW: 97866.3 Da PI: 9.0628

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g04120.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	7.8e-17	750	804	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Zjn_sc00018.1.g04120.1.am.mk 750 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 804 788899***********************************************98 PP
2	HD-ZIP_I/II	123.2	1.2e-39	750	840	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LEe+F+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ Zjn_sc00018.1.g04120.1.am.mk 750 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 830 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelk 92 ke +eLr +lk Zjn_sc00018.1.g04120.1.am.mk 831 KELAELR-ALK 840 ****9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-16	740	805	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-17	741	807	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	746	806	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	748	810	IPR001356	Homeobox domain
CDD	cd00086	2.92E-16	750	807	No hit	No description
Pfam	PF00046	2.5E-14	750	804	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	781	804	IPR017970	Homeobox, conserved site
CDD	cd14686	8.15E-4	797	838	No hit	No description
Pfam	PF02183	4.4E-10	806	840	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.5E-24	806	849	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG 60 SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR 120 TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC 180 AVALGHGEIM GACMQRLVWL FWYSELSQGE KIAAGRSVLI SSLRNRGDGS RRLADDGEGP 240 APFYTHARTH AARLLAPVHH ATSHTTATVS GFGGLLRGGI AIASSSSILG MGPPRALTPS 300 TVTSPRRAAL YCGRRSASRR WGARACPCPL PPHASPVLPY GVDTRGALGP PFDRQCELDR 360 WCDFNNFTGV GGGVGGAWAR PPLCLNAASI HACITFYLLH ATYPAGHTRP AGYLHCRRRP 420 RRFKDTDWGG PMNLGAVAFT ALRRPLHVMT SGSAAARAVT SCATAGRTYT GLQCGSSEEL 480 PRNGRGHGWH AVEDTGGLTQ PEPYHPRCCH GAGACPHRIQ DLLGRKLGRV SCRAVCHHEA 540 LLRRELEMQG EEGHFPRRAS SPVLTQDIPL RLMELGLSLG ATMADAGRDL VLGLGMGMGV 600 SRREDEGAER RGKSDREEAA AAPARRELEF GAGRCGRSSP EPPARLTFLS MEPTLGLPWP 660 SPDTGHLLAS TRGFDVNRAP SCATGAAGEE DDERDDAGAG GAAVSSSSPN NSAGSFPTDF 720 SARGQAGTGG RGGDRACSRA SDEDDGGSSR KKLRLSKEQS AFLEENFKEH ATLNPKQKLA 780 LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELAELRALK 840 TVNPFYMHLP ATTLSMCPSC ERVSSNSAPA PGASAPAAAL ALSSGGIGDA APEQRPSSFA 900 ALFSAPLHRP LAAQPQAPAG S

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG  60
SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR  120
TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC  180
AVALGHGEIM GACMQRLVWL FWYSELSQGE KIAAGRSVLI SSLRNRGDGS RRLADDGEGP  240
APFYTHARTH AARLLAPVHH ATSHTTATVS GFGGLLRGGI AIASSSSILG MGPPRALTPS  300
TVTSPRRAAL YCGRRSASRR WGARACPCPL PPHASPVLPY GVDTRGALGP PFDRQCELDR  360
WCDFNNFTGV GGGVGGAWAR PPLCLNAASI HACITFYLLH ATYPAGHTRP AGYLHCRRRP  420
RRFKDTDWGG PMNLGAVAFT ALRRPLHVMT SGSAAARAVT SCATAGRTYT GLQCGSSEEL  480
PRNGRGHGWH AVEDTGGLTQ PEPYHPRCCH GAGACPHRIQ DLLGRKLGRV SCRAVCHHEA  540
LLRRELEMQG EEGHFPRRAS SPVLTQDIPL RLMELGLSLG ATMADAGRDL VLGLGMGMGV  600
SRREDEGAER RGKSDREEAA AAPARRELEF GAGRCGRSSP EPPARLTFLS MEPTLGLPWP  660
SPDTGHLLAS TRGFDVNRAP SCATGAAGEE DDERDDAGAG GAAVSSSSPN NSAGSFPTDF  720
SARGQAGTGG RGGDRACSRA SDEDDGGSSR KKLRLSKEQS AFLEENFKEH ATLNPKQKLA  780
LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELAELRALK  840
TVNPFYMHLP ATTLSMCPSC ERVSSNSAPA PGASAPAAAL ALSSGGIGDA APEQRPSSFA  900
ALFSAPLHRP LAAQPQAPAG S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	748	754	SRKKLRL
2	798	806	RRARTKLKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036447	0.0	BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBank	KJ726911	0.0	KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-57	homeobox from Arabidopsis thaliana