PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g02990.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 338aa    MW: 36123.7 Da    PI: 6.9905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g02990.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13123174155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr l+P++   ++ + + a+i+  A++++k+L+
  Zjn_sc00018.1.g02990.1.sm.mk 123 QRMTHIAVERNRRKQMNEYLAALRALMPPS---YAHRGDQASIVGGAINFVKELE 174
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-13121176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-13121176No hitNo description
SuperFamilySSF474591.31E-16121189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-11123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-8128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEALLLSQ QGCTRRFGCG SGAMSGWPWN GLFGGAEGTM EFGGAGSSWD AAACSSSTLM  60
HGFQGLDRIP AAGAPSVACG GSSGAADVGQ QEAQPEVALA PTSERRKRRR SRPIKNKEEA  120
ESQRMTHIAV ERNRRKQMNE YLAALRALMP PSYAHRGDQA SIVGGAINFV KELEQLFQSL  180
EAQKRARQRP ADDNGDAAAF ANFFTFPQYS MNVAAVAAPA AAAPSDVTGA HDGVAELEKP  240
GSKPSAVAEV EATMVESHAN LRVLSRRRPR QLLRLVMGLQ SHRLTVLHLN MTSSGHMVLY  300
SFNLKVEDDC QLTCVDDIAS AAHQILETIE AEQGCSLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRS
3123134RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560413e-74BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519703e-74EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBankKJ7280353e-74KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803750.11e-126transcription factor bHLH94-like
SwissprotQ9C7T41e-68BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK917e-69BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2S3H0E01e-125A0A2S3H0E0_9POAL; Uncharacterized protein
STRINGPavir.Bb02386.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]