PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g02650.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 357aa MW: 37998.4 Da PI: 9.3108

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g02650.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.8e-38	39	95	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ ++ Zjn_sc00018.1.g02650.1.am.mk 39 GEPCPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSA 95 578**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	39	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	40	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MQEPTRRPAP PFAGVDLRRP KGYPEPATVK VEEAPATAGE PCPRCESRET KFCYYNNYNT 60 SQPRHFCKSC RRYWTKGGSL RNVPVGGGTR KSSSASPASP KNPKRSKNSK RRRVAPSPDP 120 APSTDDAVAS NAGVGDREPT PAPLTEDAAA GNVEDRAHVA PPAAEQGFKS TSVARGLGVT 180 DAGGGGGKEP PDTGPFEWPS SCGDLGSFWG AGVFTDTDPA LPVEFDPSGL SRRGHAPPMT 240 QPGALLRDRV RQLIGNFRLP RTYDGRAGVA WGSTARWSVP PSPGAFGWTS TSWCFELRAA 300 ADADGSLIPT ATRALYAASG SVVGWISIVT SSREWRGEGV HTRCWLPTGV FLPQLCH

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MQEPTRRPAP PFAGVDLRRP KGYPEPATVK VEEAPATAGE PCPRCESRET KFCYYNNYNT  60
SQPRHFCKSC RRYWTKGGSL RNVPVGGGTR KSSSASPASP KNPKRSKNSK RRRVAPSPDP  120
APSTDDAVAS NAGVGDREPT PAPLTEDAAA GNVEDRAHVA PPAAEQGFKS TSVARGLGVT  180
DAGGGGGKEP PDTGPFEWPS SCGDLGSFWG AGVFTDTDPA LPVEFDPSGL SRRGHAPPMT  240
QPGALLRDRV RQLIGNFRLP RTYDGRAGVA WGSTARWSVP PSPGAFGWTS TSWCFELRAA  300
ADADGSLIPT ATRALYAASG SVVGWISIVT SSREWRGEGV HTRCWLPTGV FLPQLCH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	3e-76	dof zinc finger protein MNB1A
TrEMBL	A0A1E5V289	4e-81	A0A1E5V289_9POAL; Dof zinc finger protein MNB1A
STRING	Si030774m	1e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-27	DOF zinc finger protein 1