PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g02350.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 213aa MW: 22714.9 Da PI: 5.6474

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g02350.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.6	3.8e-53	59	162	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksd Zjn_sc00018.1.g02350.1.sm.mk 59 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSD 139 89****99999**************************************************************** PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 iaaa++rt++fdflvdivprd+ Zjn_sc00018.1.g02350.1.sm.mk 140 IAAAIARTEVFDFLVDIVPRDDA 162 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.56E-31	55	153	IPR009072	Histone-fold
Pfam	PF00808	4.1E-21	81	144	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-36	82	159	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDPSKSSTPP PPPVMGAPVA YPPAGYPPAA AAGAPAYAQQ LYTPPAAAAA QQAAAAQQQL 60 QMFWAEQYRE IEATTDFKNH NLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILELT 120 HRGWAHAEEN KRRTLQKSDI AAAIARTEVF DFLVDIVPRD DAKDADAAAA AAAAVAAGIP 180 RPAAGVPATD PLAYYYVPQQ SLGIWVPHAI VGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-56	67	159	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100449	0.0	FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611933.1	1e-90	nuclear transcription factor Y subunit C-6-like
Swissprot	Q9XE33	1e-75	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A0E0ETA1	4e-89	A0A0E0ETA1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0ILC5	4e-89	A0A0E0ILC5_ORYNI; Uncharacterized protein
STRING	OMERI09G10750.1	7e-90	(Oryza meridionalis)
STRING	ONIVA09G14690.1	7e-90	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	5e-55	nuclear factor Y, subunit C3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]