PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00018.1.g02040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 389aa MW: 42550.4 Da PI: 6.5014 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 230 | 249 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Zjn_sc00018.1.g02040.1.sm.mk 230 FPCPVCFKTFNRYNNMQMHM 249 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 316 | 336 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Zjn_sc00018.1.g02040.1.sm.mk 316 CRRCGKAFAVKGDWRTHEKNC 336 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-6 | 230 | 249 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.494 | 230 | 257 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 232 | 252 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.64E-6 | 296 | 334 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 301 | 334 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 314 | 334 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MENPYTSFFQ NHHCRYYYHP ATQPGQPAPA PAPPAAAYSL QFFPTPPTTV PTAAPYSPPL 60 PPLREALPLL SLAPASRDED RRGSRRTEAD SDEDDGEEEA GPKSISNQGQ QRVGGLFTDL 120 NAKAASDPMD VESGAGSAAG DVTVALRIGL PTTSAGLGLD LDDVVEEVED NDGNCQGRND 180 WENGASREGE EEAAAAPLGL GFPSTPIGRL NKGQYWIPTP SQILIGPTQF PCPVCFKTFN 240 RYNNMQMHMW GHGSQYRKGP ESLRGIQPTA MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT 300 LQTHYQRRHG LKPFLCRRCG KAFAVKGDWR THEKNCGRLW YCLCGSEFKH KRSLKDHARA 360 FGHGHVAVGG GGIDEDDDGA VSDVEQHVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969661 | 0.0 | EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957169.1 | 1e-155 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-120 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A3B6LP54 | 1e-155 | A0A3B6LP54_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UDH7 | 1e-155 | A0A446UDH7_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_6888AE9CB.1 | 1e-155 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-108 | C2H2 family protein |
Publications ? help Back to Top | |||
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