PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00018.1.g01460.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 454aa MW: 50541.4 Da PI: 4.2202 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.7 | 1e-44 | 10 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknrat 78 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t Zjn_sc00018.1.g01460.1.sm.mkhc 10 PPGFRFSPTDEELVLYFLKRRISSGRPTP--YIADVDVYKFHPSHLPErsALQTGDRQWFFFSRLDRKYPNGSRASRTT 86 8*********************9999555..6**************94357888999********************** PP NAM 79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg+d+ v+s +g+ vg kktLv+++grap+ge+tdWvm ey++ Zjn_sc00018.1.g01460.1.sm.mkhc 87 GDGYWKATGRDRFVCSGgsGGRSVGNKKTLVYHHGRAPRGERTDWVMYEYTI 138 ***************98778889***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-51 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.195 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-23 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MENSPPRRWP PGFRFSPTDE ELVLYFLKRR ISSGRPTPYI ADVDVYKFHP SHLPERSALQ 60 TGDRQWFFFS RLDRKYPNGS RASRTTGDGY WKATGRDRFV CSGGSGGRSV GNKKTLVYHH 120 GRAPRGERTD WVMYEYTILA DALPQAAGAR EAYALYKLFQ KSGVGPKNGE QYGAPFREED 180 WLDDDEEQDL PAGAVVHPVA TRPTTTNCAA TVEQQAEREL VGDLEELLSE FGNDQEQAEA 240 QLEFSNSVSS QSQLQHADGQ GCRSDCASKA QVVDASTGND ALPVADNTCT DLPLGDIEEL 300 LMRISDDQQN TEFFSDFSTS LPELQLQCDE YQAWLDSNKG ERIGAKDPTA SSGAVMTAEC 360 TSTELPVGDL EGLLLQIAND QEMVEPLSEF STPFSHHNFD QIGIGDICHG DPAGLMNYNS 420 QDADESEFLE IHDFFDLEDV EQTMNCTETE RLLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-41 | 10 | 138 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310063.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
TrEMBL | A0A1E5UTD4 | 0.0 | A0A1E5UTD4_9POAL; NAC domain-containing protein 16 | ||||
TrEMBL | A0A3L6T5I8 | 0.0 | A0A3L6T5I8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J04800.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 7e-62 | NAC domain containing protein 16 |