PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g00820.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 212aa    MW: 23135.1 Da    PI: 10.5288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g00820.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.61.1e-2194143255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp     + +r++lg+fgt+eeAa+a++aa+++++g
  Zjn_sc00018.1.g00820.1.sm.mk  94 QYRGVRRRP-WGRWAAEIRDPA----KaARVWLGTFGTPEEAARAYDAAARRFRG 143
                                   69*******.**********83....36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-1893153No hitNo description
SuperFamilySSF541711.96E-2294152IPR016177DNA-binding domain
PROSITE profilePS5103225.15994151IPR001471AP2/ERF domain
PfamPF008474.1E-1594143IPR001471AP2/ERF domain
SMARTSM003802.9E-3594157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3194152IPR001471AP2/ERF domain
PRINTSPR003673.4E-1195106IPR001471AP2/ERF domain
PRINTSPR003673.4E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MARKRALPDD LPGEEPAAVA EKQRRGDHGF LAHRYYSAAR AEHDVAVVTA ALTQVVSATA  60
PPSRDEAAAV PAPRLLVEQV CPRGREEVPP VRAQYRGVRR RPWGRWAAEI RDPAKAARVW  120
LGTFGTPEEA ARAYDAAARR FRGVKAKLNF PTATPLVVPS SPDHERQATV SSSSSMAPST  180
EFADLRRYAR ILKSTGEDDS SSQVAGTRFP IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2094151563ATERF1
3gcc_A3e-2094151563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278391e-53KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652886.12e-38ethylene-responsive transcription factor 11
SwissprotQ9FH543e-34EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1E5V4L24e-41A0A1E5V4L2_9POAL; Uncharacterized protein
STRINGGRMZM2G131281_P017e-38(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]