PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00017.1.g07870.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 427aa MW: 46342.3 Da PI: 5.3143 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 36.7 | 5.9e-12 | 385 | 417 | 1 | 31 |
GATA 1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 C++Cgt +Tp+WR gp+g tLC aCG+ y Zjn_sc00017.1.g07870.1.am.mk 385 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 417 *************77799************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.8E-5 | 110 | 161 | No hit | No description |
SMART | SM00401 | 0.0047 | 112 | 156 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.082 | 224 | 269 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.183 | 379 | 416 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.9E-5 | 379 | 427 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-9 | 379 | 421 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-9 | 380 | 418 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.92E-7 | 384 | 416 | No hit | No description |
Pfam | PF00320 | 4.7E-9 | 385 | 416 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MVPGDLPDDE SPAALAEQLF GSGDDPMAFI DDTASSVVLA ALEVVAATGK DGKEEEELKG 60 LSNKDVFPTL NTKALPEAPA TAPRTQRKGV RPSQGAASSL PPALRPGTRA PAKAGRQCRH 120 CGTEGSYTLC NVCGIQYKRG ALLPEYRPLN IPTFSPDLHS NHQQRVIDMA RSREEEKKES 180 FLSDADLEAI INDPALQALA ASGMDEHRDW VLKNAFQPGT LAPTKAGQQC RHCGTYETPL 240 WHICTGPEGR FALWGIQYCN VTLLPEYPPL KTPTSPALHS DWRQCVIDTA RFLEAEWSRS 300 GIGLEAFLRD MVWDMLAASG HYSKEELESL SKAASTLDTM ALPEAAATAQ LPQTMGVRWS 360 REAASSPLPA VQPGNLAPAK AGQQCRHCGT YETPQWRICT GPEGRFTLCD ACGIQYSNVT 420 VLPEYRP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP28185 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51080.1 | 1e-18 | GATA transcription factor 6 |