PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g07870.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 427aa    MW: 46342.3 Da    PI: 5.3143
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g07870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.9e-12385417131
                          GATA   1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 
                                   C++Cgt +Tp+WR   gp+g  tLC aCG+ y 
  Zjn_sc00017.1.g07870.1.am.mk 385 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 417
                                   *************77799************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.8E-5110161No hitNo description
SMARTSM004010.0047112156IPR000679Zinc finger, GATA-type
SMARTSM004010.082224269IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183379416IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-5379427IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-9379421No hitNo description
Gene3DG3DSA:3.30.50.101.5E-9380418IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.92E-7384416No hitNo description
PfamPF003204.7E-9385416IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVPGDLPDDE SPAALAEQLF GSGDDPMAFI DDTASSVVLA ALEVVAATGK DGKEEEELKG  60
LSNKDVFPTL NTKALPEAPA TAPRTQRKGV RPSQGAASSL PPALRPGTRA PAKAGRQCRH  120
CGTEGSYTLC NVCGIQYKRG ALLPEYRPLN IPTFSPDLHS NHQQRVIDMA RSREEEKKES  180
FLSDADLEAI INDPALQALA ASGMDEHRDW VLKNAFQPGT LAPTKAGQQC RHCGTYETPL  240
WHICTGPEGR FALWGIQYCN VTLLPEYPPL KTPTSPALHS DWRQCVIDTA RFLEAEWSRS  300
GIGLEAFLRD MVWDMLAASG HYSKEELESL SKAASTLDTM ALPEAAATAQ LPQTMGVRWS  360
REAASSPLPA VQPGNLAPAK AGQQCRHCGT YETPQWRICT GPEGRFTLCD ACGIQYSNVT  420
VLPEYRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2818535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-18GATA transcription factor 6