PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00017.1.g07200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31014 Da PI: 5.1783 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.9 | 2e-49 | 11 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+g Zjn_sc00017.1.g07200.1.sm.mk 11 LPPGFRFCPSDEELVSFYLLKKVANERVAS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTG 90 79*************************888.88***************77777889************************* PP NAM 82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkd+ v + +++ vg++ktLvfy grap+g+kt+Wvmhe+rle Zjn_sc00017.1.g07200.1.sm.mk 91 YWKATGKDRVVREPgpgTRAIVGMRKTLVFYLGRAPNGQKTSWVMHEFRLE 141 ***********9998877788***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-59 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.568 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGLITGMDAA LPPGFRFCPS DEELVSFYLL KKVANERVAS GTLVEVDLHA REPWELPDVA 60 KLTAEEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRV VREPGPGTRA IVGMRKTLVF 120 YLGRAPNGQK TSWVMHEFRL ETPNTLPKED WVLCRVFNKT KPTEETQQSS SGALHHNHGA 180 ATLLSALQPA DTTPAVSCSG SSDAWLTNLP VLNLNQDSFL DFCSPVVHGE LAVEPHNAAI 240 AMAPEPAVGF EDHDMGDIET EYDPQALLLG SCCYGDVGIY F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 10 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 10 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 10 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 10 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-49 | 10 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 10 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796946.1 | 1e-116 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 4e-59 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2S3ILI1 | 1e-115 | A0A2S3ILI1_9POAL; Uncharacterized protein | ||||
STRING | Si036835m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-73 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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