PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g07160.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 273aa    MW: 29623 Da    PI: 5.8762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g07160.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEd++lv +v+q+G ++W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00017.1.g07160.1.sm.mkhc 14 RGAWSAEEDQRLVAYVRQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
                                    89******************************99************97 PP
2Myb_DNA-binding51.62.1e-1667112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg++T++E+ l++++++qlG++ W++Ia+ ++ gRt++++k+ w+++l
  Zjn_sc00017.1.g07160.1.sm.mkhc  67 RGNFTADEEGLIIRLHHQLGNR-WSAIAAQLP-GRTDNEIKNVWHTHL 112
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.335965IPR017930Myb domain
SuperFamilySSF466894.21E-2911108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001672.48E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2665116IPR009057Homeodomain-like
SMARTSM007172.9E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.39766116IPR017930Myb domain
PfamPF002498.5E-1567112IPR001005SANT/Myb domain
CDDcd001672.45E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRAPCCEKE GLRRGAWSAE EDQRLVAYVR QHGHPNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TADEEGLIIR LHHQLGNRWS AIAAQLPGRT DNEIKNVWHT HLKKRLENAD  120
GGGGRKKQAG KSKTAKKAAQ AAADDVEGAV ASAFTDTAAS PGLSSSGVTC STATESTAAE  180
PSVDNAATTS ASRQVAVKAE EIESFSTAEF PPIDESFWTS AEVMDMDLGA MDEELGLTSS  240
APSTGDHEDM EFWLQMLLES GDMSSGLERH VNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837681e-134BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds.
GenBankKJ7268981e-134KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982863.11e-123transcription factor MYB4
SwissprotQ7XBH46e-79MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0A9PE011e-128A0A0A9PE01_ARUDO; Uncharacterized protein
STRINGPavir.J09313.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-72myb domain protein 13
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]