PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g04700.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 290aa    MW: 32046.5 Da    PI: 4.854
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g04700.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.23.9e-2227102185
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rWt+qe+l+Lie++r   +        +p+W++v++++r++g+er+++qC+++w+nl+++ykki+++e+  ++ +    
  Zjn_sc00017.1.g04700.1.sm.mkhc  27 RWTRQEILVLIEGKRMAATP------LEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIRDWERAAAAAR---E 96 
                                     8***********99866554......5789***************************************974433...4 PP

                        trihelix  80 pyfdql 85 
                                     p f  +
  Zjn_sc00017.1.g04700.1.sm.mkhc  97 PSFWAM 102
                                     777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.63E-62679IPR009057Homeodomain-like
PfamPF138374.8E-1027101No hitNo description
Gene3DG3DSA:1.10.10.602.4E-52777IPR009057Homeodomain-like
PROSITE profilePS500907.2712778IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSDAGDPAGA AAAAATTSSG RAPRLPRWTR QEILVLIEGK RMAATPLEPK WAAVAEYCRR  60
HGVERGAVQC RKRWSNLAGD YKKIRDWERA AAAAREPSFW AMRNDARRER RLPGFFDREV  120
YDILEGRGRA ILGGRSGGNA AEEEVVVPAE EEEEEEEEEE ATTAATPPPA HPVIALPISE  180
KPESSRQQQS AEQGTSKDKQ PEQSTDKDTP AQQAGQKRPR TEEDTGEGTT DLQSKLIEVL  240
ERNSRMVAQQ LEAENLNCQL DREQRNDQAN SIVLVLGRLA DAVGRIADKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798066.11e-139trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3GPV41e-137A0A2S3GPV4_9POAL; Uncharacterized protein
STRINGSi017674m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-67Trihelix family protein