PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00017.1.g04580.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 36262.1 Da PI: 4.8838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 120 | 171 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g+ Zjn_sc00017.1.g04580.1.am.mk 120 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTADEAAIAYDRAARNIRGA 171 5799******.**********754...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.62E-28 | 120 | 179 | No hit | No description |
Pfam | PF00847 | 2.3E-10 | 121 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.008 | 121 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-31 | 121 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-20 | 121 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-28 | 121 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEEVGHVDPI MRRAVTLPMP PPVQILVLSR LFISSSRFPA LYILCHATAP CSCGNRLLVL 60 SPNGHNEPPS LAPGLTESEK PAVTLSMDFS YFFSSSSSSE KKSSKRRQQQ QQQQDSGSAT 120 RYLGVRRRPW GRYAAEIRDP VTKERHWLGT FDTADEAAIA YDRAARNIRG ASARTNFAYP 180 DLPPGSSVTP YLSPDISADQ LQQYYANPVP VAQQPTPAAD QLAGHGSPGC EAYSSSYHVP 240 EAISSYGADD SMAYAGNAQM DMMYDGGAGA GAGMAWCDAS ELEFGGYRDD NANANASHGM 300 YFEEGYVHSP LFSPMPAADE VDGFQLGGSS SSYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 121 | 177 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 107 | KKSSKRRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727867 | 1e-88 | KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952596.1 | 1e-107 | ethylene-responsive transcription factor LEP | ||||
Refseq | XP_025821358.1 | 1e-107 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1E5VG73 | 1e-114 | A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP | ||||
STRING | Pavir.Aa01903.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 9e-27 | ERF family protein |