PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00017.1.g03780.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 112aa MW: 12894.7 Da PI: 10.0211 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74 | 2.6e-23 | 20 | 100 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W+ +e++ Li++r em++++++ k +++lWee+s m +g +r+p qCk+ w +l ++y++ k+ e+++ +t+ Zjn_sc00017.1.g03780.1.am.mkhc 20 KWKPEEIKNLIQMRGEMNDKFQSVKGRMALWEEISGSMLNQGTSRTPAQCKSLWTSLVQKYEESKRDEESK-----KTW 93 7*****************************************************************99984.....78* PP trihelix 80 pyfdqle 86 pyf+ ++ Zjn_sc00017.1.g03780.1.am.mkhc 94 PYFSAMD 100 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.886 | 13 | 77 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.55E-5 | 16 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-7 | 16 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0034 | 17 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 8.65E-19 | 19 | 84 | No hit | No description |
Pfam | PF13837 | 1.4E-19 | 19 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MSKDSNQSAP APVKSSKKNK WKPEEIKNLI QMRGEMNDKF QSVKGRMALW EEISGSMLNQ 60 GTSRTPAQCK SLWTSLVQKY EESKRDEESK KTWPYFSAMD QILSREGEMA TK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059666 | 6e-82 | AK059666.1 Oryza sativa Japonica Group cDNA clone:001-031-F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800218.1 | 4e-62 | ribonuclease J isoform X2 | ||||
Swissprot | Q84W56 | 7e-37 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A0A9UMM5 | 4e-63 | A0A0A9UMM5_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A1E5W342 | 4e-62 | A0A1E5W342_9POAL; Ribonuclease J | ||||
TrEMBL | A0A2T7F7E7 | 4e-62 | A0A2T7F7E7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab01874.1.p | 5e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4996 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 3e-39 | Trihelix family protein |
Publications ? help Back to Top | |||
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