PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00017.1.g02830.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 392aa MW: 42236.5 Da PI: 7.8203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00017.1.g02830.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.5e-15	62	143	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g++++pk qCk++++ l+k+yk +k+ + + Zjn_sc00017.1.g02830.1.am.mk 62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKTPKsdaQCKNRIDTLKKKYKVEKAKHDS-------S 135 ***********************************878899988765559**********9998886.......5 PP trihelix 79 cpyfdqle 86 + yf++l+ Zjn_sc00017.1.g02830.1.am.mk 136 WTYFHRLD 143 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-23	60	145	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDDDAEASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGSGGRED 60 AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKTPKS DAQCKNRIDT 120 LKKKYKVEKA KHDSSWTYFH RLDELLAPIY KPGSGSSSGA RSAPPMVPPR FSFPQRTRTP 180 LQPPAVAKRR IPSPPTQPSA SSGSSDGFPP EPPSATVANG KKPRVEEPAP ANGAESNNRA 240 QSLRELARAI RRFGEVYELI ESSKREQELR MERERLEAAR ELGDQRVQFF LKMQMELSKA 300 TDGAPSATPM AAATAIDGNG SRRAAMATDV ATSSNHKVRY RSKDSRHPHT AQQPQYQHSQ 360 NNSGAAAPAS GNSGDTENKE DEDMEDEDEE SQ

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDDDAEASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGSGGRED  60
AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKTPKS DAQCKNRIDT  120
LKKKYKVEKA KHDSSWTYFH RLDELLAPIY KPGSGSSSGA RSAPPMVPPR FSFPQRTRTP  180
LQPPAVAKRR IPSPPTQPSA SSGSSDGFPP EPPSATVANG KKPRVEEPAP ANGAESNNRA  240
QSLRELARAI RRFGEVYELI ESSKREQELR MERERLEAAR ELGDQRVQFF LKMQMELSKA  300
TDGAPSATPM AAATAIDGNG SRRAAMATDV ATSSNHKVRY RSKDSRHPHT AQQPQYQHSQ  360
NNSGAAAPAS GNSGDTENKE DEDMEDEDEE SQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965091	1e-137	EU965091.1 Zea mays clone 283747 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001170546.1	1e-154	uncharacterized protein LOC100384564
Swissprot	Q9LJG8	8e-35	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0E0K1B1	1e-155	A0A0E0K1B1_ORYPU; Uncharacterized protein
STRING	Pavir.J27535.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-32	sequence-specific DNA binding transcription factors