PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00017.1.g02100.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 406aa MW: 43194.6 Da PI: 6.2389

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00017.1.g02100.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.7	7.7e-19	321	355	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C ttkTp+WR gp+g+ tLCnaCGl+y kg+ Zjn_sc00017.1.g02100.1.am.mk 321 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 355 ******************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.123	315	354	IPR000679	Zinc finger, GATA-type
SMART	SM00401	8.0E-17	315	370	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-15	317	376	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.5E-15	319	354	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.84E-19	320	376	No hit	No description
Pfam	PF00320	1.8E-16	321	355	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	321	346	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MPMTTSTMTM SPFFLYNEKE GIDDTPANLE DGWPRGGLSC PDDELNKVVP VEYFDFDKFP 60 ADNTPDDVLG LDGSALSETS GHAAPTSALP TASDSAGPCP ALDGAAATGF VPPFQQPGLV 120 DVLDIDSSPP LPDELSCLVA TFFEPSWPAQ HTLYGVIPDL VPPLPAQDSE SLNCSIATCT 180 VPLFPALDVA SRSAPLLPAQ HAVAGAVVPD TAPPLRAHDT VPPAGPPATC STSSGCVSSM 240 PWEHESAPSV APSPIAATSV VPRKQRHRSV TRRNPSWLPK SQFYEKPPAA PRAAPSSLKA 300 GGNDKPPVAK HRRNRERDRV CSHCSTTKTP QWRAGPRGPG TLCNACGLRY TDKGSLLETY 360 RPTTSPSFDS GKHSNRPSKA AKIMEKAELA KVMDDKYRRR LSESSP

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MPMTTSTMTM SPFFLYNEKE GIDDTPANLE DGWPRGGLSC PDDELNKVVP VEYFDFDKFP  60
ADNTPDDVLG LDGSALSETS GHAAPTSALP TASDSAGPCP ALDGAAATGF VPPFQQPGLV  120
DVLDIDSSPP LPDELSCLVA TFFEPSWPAQ HTLYGVIPDL VPPLPAQDSE SLNCSIATCT  180
VPLFPALDVA SRSAPLLPAQ HAVAGAVVPD TAPPLRAHDT VPPAGPPATC STSSGCVSSM  240
PWEHESAPSV APSPIAATSV VPRKQRHRSV TRRNPSWLPK SQFYEKPPAA PRAAPSSLKA  300
GGNDKPPVAK HRRNRERDRV CSHCSTTKTP QWRAGPRGPG TLCNACGLRY TDKGSLLETY  360
RPTTSPSFDS GKHSNRPSKA AKIMEKAELA KVMDDKYRRR LSESSP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20691	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	4e-20	GATA transcription factor 9