PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g00190.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 529aa    MW: 57198.1 Da    PI: 9.3295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g00190.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-491002271128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrF P+deelv++yL+kkv+++++    ++ evd++  ePw+Lp  +k + ++wyfFs rd+kyatg+r+nratk+g
  Zjn_sc00017.1.g00190.1.am.mk 100 LPPGFRFFPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPDVAKLTASDWYFFSFRDRKYATGSRTNRATKTG 179
                                   79*************************998.88***************77777889************************* PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd+ev s  ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl
  Zjn_sc00017.1.g00190.1.am.mk 180 YWKATGKDREVRSPaTRAVVGMRKTLVFYHGRAPNGVKSGWVMHEFRL 227
                                   *************977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-5892246IPR003441NAC domain
PROSITE profilePS5100557.622100246IPR003441NAC domain
PfamPF023653.9E-27101227IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MMIKLARRSP GWFAHQLGSR VAFTAGKNIT SVAPAGLRAF DLGRLPRRDT ASCSSSSSSV  60
STRDRSVSVL ASADRDSPVD GRTAHHGNRA MALREIESTL PPGFRFFPSD EELVCHYLHK  120
KVANERIAQG TLVEVDLHAR EPWELPDVAK LTASDWYFFS FRDRKYATGS RTNRATKTGY  180
WKATGKDREV RSPATRAVVG MRKTLVFYHG RAPNGVKSGW VMHEFRLDTP CSSPREDWVL  240
CRVFEKTKGD GAADGHDSAS GASSSPTLTG SSSHVDAPER QEHHAPCGGY YGAGFAPQQE  300
VAVLLPCYGS YGPPAVDRHG ALPAGFEFGA REVAGDEYGF GYFDMAGFEY VGNHGHGGMG  360
QRVTAWCGTP SSLPAAYTCA RPLAAGVKPP PPAALTVPYE EPEPTPAAAC SGCTWGLGNA  420
VARSSSPVTD TKDGGPREAA AALGQARRRS NAPKQIEQGT QRTHMLLDAI LFVDLTSCSW  480
RRRRTNQRPA DRPARHAGAG KNNSDLHCSP YQHLQASKKI DMRGANICK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-479924619168NAC domain-containing protein 19
3swm_B5e-479924619168NAC domain-containing protein 19
3swm_C5e-479924619168NAC domain-containing protein 19
3swm_D5e-479924619168NAC domain-containing protein 19
3swp_A5e-479924619168NAC domain-containing protein 19
3swp_B5e-479924619168NAC domain-containing protein 19
3swp_C5e-479924619168NAC domain-containing protein 19
3swp_D5e-479924619168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381221e-161BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953145.11e-115NAC domain-containing protein 79
TrEMBLA0A1E5VTL81e-116A0A1E5VTL8_9POAL; Protein CUP-SHAPED COTYLEDON 1
STRINGSi018001m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-73NAC domain containing protein 74