PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g06980.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 153aa    MW: 16547.9 Da    PI: 10.7272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g06980.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000523759123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C  Cg++F +   L  H  +H
  Zjn_sc00016.1.g06980.1.sm.mk 37 FQCRTCGRRFATFQALGGHRTSH 59
                                  89**********99998888777 PP
2zf-C2H215.74.2e-0590112123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cg +F++   L  H+r+H
  Zjn_sc00016.1.g06980.1.sm.mk  90 HRCTTCGAVFPTGQALGGHMRRH 112
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-93660IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-837112No hitNo description
SMARTSM003550.193759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8453764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
PfamPF139123.5E-1389114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.24590112IPR007087Zinc finger, C2H2
SMARTSM003550.01190112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MTNLLHFLSL SLSPASKVIV KRDRGTRRTR LQDDGAFQCR TCGRRFATFQ ALGGHRTSHN  60
RPRVRANGLD LLLGASRPAG KGAAGKDAVH RCTTCGAVFP TGQALGGHMR RHKAAFDAAA  120
VEIMTSSGLS EEDGERDDAE DLLILPKTLI HFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.11e-49zinc finger protein ZAT12
TrEMBLA0A368SBJ93e-48A0A368SBJ9_SETIT; Uncharacterized protein
STRINGSi027432m5e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.15e-22C2H2 family protein