PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g06930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 815aa MW: 90636.5 Da PI: 5.1902

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g06930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.1	2.2e-108	434	806	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++ L++cA+a+s+gdl+ a+++L+++++++s +g++++Rla++f+++L+arla+++s++yk+l ++ ts +++ l+a+ Zjn_sc00016.1.g06930.1.am.mk 434 LRTMLIHCAQALSTGDLRGANEMLKQIKQHSSLTGNATERLAHCFAQGLEARLAGTGSQVYKSLMSKCTS---VVDYLKAY 511 5789***********************************************************99999...**** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 klf +s + k+ h+ N++I +av+g++++Hi+ +++++G+QWp Ll+ La+R++gpp++R Tg++ p++g + +le+ Zjn_sc00016.1.g06930.1.am.mk 512 KLFMAASCFKKVKHVFSNRTIADAVAGKSKLHIVEYGVQHGFQWPGLLHFLANREGGPPEVRFTGIDLPQPGfrPAYQLEK 592 *******************************************************************9999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvv 239 tgerL++ A++++vpf+f++ +a ++e++++e+L+++p+E+l+Vn+ l +l+de+v ++s +rd vLk +++++Pkv+ Zjn_sc00016.1.g06930.1.am.mk 593 TGERLSNCARQFRVPFKFHA-IAAKWETVTPEDLNIDPDEVLVVNCECYLDKLMDETVVVDSpsPRDMVLKNIRNMRPKVF 672 ****************.799*****************************98888779************ PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 v++ + +++ Fl+rf eal +ysa fd+l+a++pr+++ r +Er +lgr++ nv+acega+r+er et+++W+ r + Zjn_sc00016.1.g06930.1.am.mk 673 VHCVVNGTFGAPFFLTRFREALFFYSAQFDMLDATIPRDNDVRLLIERDILGRSALNVIACEGADRVERPETYKQWQVRNN 753 ***************************************************************************** PP GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +aG++++pl+ +++k ++ +++++ + + ++e++ +l++gWk+r L+++S W Zjn_sc00016.1.g06930.1.am.mk 754 RAGLRQLPLRPEIVKLVRDKVKNHYHKDFLLDEDHRWLLQGWKGRVLYAISTW 806 *********************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.697	408	787	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-106	434	806	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
LHLVYSSTVP SADPVAAAVA SPFRRLPGRF PLSPPSSRLQ STPEALIFNS IHVSAHPTSA 60 TPLLLAMAAT PEDFLGQGGY LAVPEPFSPS VFLDLPPTPR PDGGDDPASS DDLVLPFISR 120 MLMEEDIDEN FFYQYPDHPA LLTLQQPYAE ILSAPSSSSD SATTNTTLTL SSFSDAAEPT 180 WPYDPIELAQ LLRSPPCPDE GLGLHDFTAD DDSAVLFDGA TPGFEQISMV DASPNDGGEA 240 IQSSGSWGAA EEEDTKTNIA TLPAADEDHD ALASAFFGGH RAVNMDMLNR AFAKGMEEAK 300 KFLPANSGLF VDLDATTTEH LPTNSKPLTV CNVKKEEVLV DGLSIFRERS NGRGRKNRHH 360 EDDLEMEIGR SSKLMMQEQE DSDAQEMYRE IMSFNVEEFM KRMQDLRIAK DSESEKSSRK 420 GVRGRQGADE VVDLRTMLIH CAQALSTGDL RGANEMLKQI KQHSSLTGNA TERLAHCFAQ 480 GLEARLAGTG SQVYKSLMSK CTSVVDYLKA YKLFMAASCF KKVKHVFSNR TIADAVAGKS 540 KLHIVEYGVQ HGFQWPGLLH FLANREGGPP EVRFTGIDLP QPGFRPAYQL EKTGERLSNC 600 ARQFRVPFKF HAIAAKWETV TPEDLNIDPD EVLVVNCECY LDKLMDETVV VDSPSPRDMV 660 LKNIRNMRPK VFVHCVVNGT FGAPFFLTRF REALFFYSAQ FDMLDATIPR DNDVRLLIER 720 DILGRSALNV IACEGADRVE RPETYKQWQV RNNRAGLRQL PLRPEIVKLV RDKVKNHYHK 780 DFLLDEDHRW LLQGWKGRVL YAISTWVAEG SNSIF

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

LHLVYSSTVP SADPVAAAVA SPFRRLPGRF PLSPPSSRLQ STPEALIFNS IHVSAHPTSA  60
TPLLLAMAAT PEDFLGQGGY LAVPEPFSPS VFLDLPPTPR PDGGDDPASS DDLVLPFISR  120
MLMEEDIDEN FFYQYPDHPA LLTLQQPYAE ILSAPSSSSD SATTNTTLTL SSFSDAAEPT  180
WPYDPIELAQ LLRSPPCPDE GLGLHDFTAD DDSAVLFDGA TPGFEQISMV DASPNDGGEA  240
IQSSGSWGAA EEEDTKTNIA TLPAADEDHD ALASAFFGGH RAVNMDMLNR AFAKGMEEAK  300
KFLPANSGLF VDLDATTTEH LPTNSKPLTV CNVKKEEVLV DGLSIFRERS NGRGRKNRHH  360
EDDLEMEIGR SSKLMMQEQE DSDAQEMYRE IMSFNVEEFM KRMQDLRIAK DSESEKSSRK  420
GVRGRQGADE VVDLRTMLIH CAQALSTGDL RGANEMLKQI KQHSSLTGNA TERLAHCFAQ  480
GLEARLAGTG SQVYKSLMSK CTSVVDYLKA YKLFMAASCF KKVKHVFSNR TIADAVAGKS  540
KLHIVEYGVQ HGFQWPGLLH FLANREGGPP EVRFTGIDLP QPGFRPAYQL EKTGERLSNC  600
ARQFRVPFKF HAIAAKWETV TPEDLNIDPD EVLVVNCECY LDKLMDETVV VDSPSPRDMV  660
LKNIRNMRPK VFVHCVVNGT FGAPFFLTRF REALFFYSAQ FDMLDATIPR DNDVRLLIER  720
DILGRSALNV IACEGADRVE RPETYKQWQV RNNRAGLRQL PLRPEIVKLV RDKVKNHYHK  780
DFLLDEDHRW LLQGWKGRVL YAISTWVAEG SNSIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-42	440	807	24	378	Protein SCARECROW
5b3h_D	1e-42	440	807	24	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317198.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3L6PFU1	0.0	A0A3L6PFU1_PANMI; Scarecrow-like protein 34
STRING	Sb05g027740.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-151	SCARECROW-like 14